Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8JFH
DownloadVisualize
BU of 8jfh by Molmil
Crystal structure of 3-oxoacyl-ACP reductase FabG in complex with NADP+ and 3-keto-octanoyl-ACP from Helicobacter pylori in an inactive form that priors the acyl substrate delivery
Descriptor: 3-oxoacyl-[acyl-carrier-protein] reductase, Acyl carrier protein, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Zhou, J.S, Zhang, L.
Deposit date:2023-05-18
Release date:2023-11-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Molecular Basis of Catalysis by SDR Family Members Ketoacyl-ACP Reductase FabG and Enoyl-ACP Reductase FabI in Type-II Fatty Acid Biosynthesis.
Angew.Chem.Int.Ed.Engl., 62, 2023
6N7X
DownloadVisualize
BU of 6n7x by Molmil
S. cerevisiae U1 snRNP
Descriptor: 56 kDa U1 small nuclear ribonucleoprotein component, Pre-mRNA-processing factor 39, Protein NAM8, ...
Authors:Li, X, Liu, S, Jiang, J, Zhang, L, Espinosa, S, Hill, R.C, Hansen, K.C, Zhou, Z.H, Zhao, R.
Deposit date:2018-11-28
Release date:2019-07-24
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:CryoEM structure of Saccharomyces cerevisiae U1 snRNP offers insight into alternative splicing.
Nat Commun, 8, 2017
8JF9
DownloadVisualize
BU of 8jf9 by Molmil
Crystal structure of 3-oxoacyl-ACP reductase FabG from Helicobacter pylori
Descriptor: 3-oxoacyl-[acyl-carrier-protein] reductase
Authors:Zhou, J.S, Zhang, L.
Deposit date:2023-05-17
Release date:2023-11-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Molecular Basis of Catalysis by SDR Family Members Ketoacyl-ACP Reductase FabG and Enoyl-ACP Reductase FabI in Type-II Fatty Acid Biosynthesis.
Angew.Chem.Int.Ed.Engl., 62, 2023
6MH8
DownloadVisualize
BU of 6mh8 by Molmil
High-viscosity injector-based Pink Beam Serial Crystallography of Micro-crystals at a Synchrotron Radiation Source
Descriptor: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a, Soluble cytochrome b562 chimeric construct
Authors:Martin-Garcia, J.M, Zhu, L, Mendez, D, Lee, M, Chun, E, Li, C, Hu, H, Subramanian, G, Kissick, D, Ogata, C, Henning, R, Ishchenko, A, Dobson, Z, Zhan, S, Weierstall, U, Spence, J.C.H, Fromme, P, Zatsepin, N.A, Fischetti, R.F, Cherezov, V, Liu, W.
Deposit date:2018-09-17
Release date:2019-04-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:High-viscosity injector-based pink-beam serial crystallography of microcrystals at a synchrotron radiation source.
Iucrj, 6, 2019
3B8A
DownloadVisualize
BU of 3b8a by Molmil
Crystal structure of yeast hexokinase PI in complex with glucose
Descriptor: Hexokinase-1, SULFATE ION, beta-D-glucopyranose
Authors:Kuser, P, Cupri, F, Bleicher, L, Polikarpov, I.
Deposit date:2007-10-31
Release date:2008-02-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal structure of yeast hexokinase PI in complex with glucose: A classical "induced fit" example revised.
Proteins, 72, 2008
2YFN
DownloadVisualize
BU of 2yfn by Molmil
galactosidase domain of alpha-galactosidase-sucrose kinase, AgaSK
Descriptor: 1,2-ETHANEDIOL, ALPHA-GALACTOSIDASE-SUCROSE KINASE AGASK, GLYCEROL, ...
Authors:Sulzenbacher, G, Bruel, L, Tison-Cervera, M, Pujol, A, Nicoletti, C, Perrier, J, Galinier, A, Ropartz, D, Fons, M, Pompeo, F, Giardina, T.
Deposit date:2011-04-07
Release date:2011-09-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Agask, a Bifunctional Enzyme from the Human Microbiome Coupling Galactosidase and Kinase Activities
J.Biol.Chem., 286, 2011
6MHO
DownloadVisualize
BU of 6mho by Molmil
Structure of the human TRPV3 channel in the apo conformation
Descriptor: Transient receptor potential cation channel subfamily V member 3
Authors:Zubcevic, L, Herzik, M.A, Wu, M, Borschel, W.F, Hirschi, M, Song, A, Lander, G.C, Lee, S.Y.
Deposit date:2018-09-18
Release date:2018-10-03
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Conformational ensemble of the human TRPV3 ion channel.
Nat Commun, 9, 2018
2YBA
DownloadVisualize
BU of 2yba by Molmil
Crystal structure of Nurf55 in complex with histone H3
Descriptor: HISTONE H3, PROBABLE HISTONE-BINDING PROTEIN CAF1
Authors:Schmitges, F.W, Prusty, A.B, Faty, M, Stutzer, A, Lingaraju, G.M, Aiwazian, J, Sack, R, Hess, D, Li, L, Zhou, S, Bunker, R.D, Wirth, U, Bouwmeester, T, Bauer, A, Ly-Hartig, N, Zhao, K, Chan, H, Gu, J, Gut, H, Fischle, W, Muller, J, Thoma, N.H.
Deposit date:2011-03-02
Release date:2011-05-11
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Histone Methylation by Prc2 is Inhibited by Active Chromatin Marks
Mol.Cell, 42, 2011
2Y6H
DownloadVisualize
BU of 2y6h by Molmil
X-2 L110F CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase
Descriptor: CALCIUM ION, XYLANASE
Authors:von Schantz, L, Hakansson, M, Logan, D.T, Walse, B, Osterlin, J, Nordberg-Karlsson, E, Ohlin, M.
Deposit date:2011-01-21
Release date:2012-03-07
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Structural basis for carbohydrate-binding specificity--a comparative assessment of two engineered carbohydrate-binding modules.
Glycobiology, 22, 2012
6MIZ
DownloadVisualize
BU of 6miz by Molmil
Human TRPM2 ion channel in an ADPR-bound state
Descriptor: Transient receptor potential cation channel subfamily M member 2
Authors:Wang, L, Fu, T.M, Xia, S, Wu, H.
Deposit date:2018-09-20
Release date:2018-12-12
Last modified:2019-01-02
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Structures and gating mechanism of human TRPM2.
Science, 362, 2018
2Y7P
DownloadVisualize
BU of 2y7p by Molmil
DntR Inducer Binding Domain in Complex with Salicylate. Trigonal crystal form
Descriptor: 2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL, 2-HYDROXYBENZOIC ACID, LYSR-TYPE REGULATORY PROTEIN
Authors:Devesse, L, Smirnova, I, Lonneborg, R, Kapp, U, Brzezinski, P, Leonard, G.A, Dian, C.
Deposit date:2011-02-01
Release date:2011-07-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structures of Dntr Inducer Binding Domains in Complex with Salicylate Offer Insights Into the Activation of Lysr-Type Transcriptional Regulators.
Mol.Microbiol., 81, 2011
6O2R
DownloadVisualize
BU of 6o2r by Molmil
Deacetylated Microtubules
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Eshun-Wilson, L, Zhang, R, Portran, D, Nachury, M.V, Toso, D, Lohr, T, Vendruscolo, M, Bonomi, M, Fraser, J.S, Nogales, E.
Deposit date:2019-02-24
Release date:2019-05-22
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Effects of alpha-tubulin acetylation on microtubule structure and stability.
Proc.Natl.Acad.Sci.USA, 116, 2019
2YLY
DownloadVisualize
BU of 2yly by Molmil
Sulfonamides as selective Estrogen Receptor beta Agonists.
Descriptor: ESTROGEN RECEPTOR BETA, N-cyclopropyl-4-oxidanyl-N-[(2R)-2-oxidanyl-2-phenyl-propyl]benzenesulfonamide, SULFATE ION
Authors:Roberts, L.R, Armour, D, Barker, C, Bazin, R, Bess, K, Brown, A, Favor, D, Ellis, D, MacKenny, M, Pullen, N, Stennett, A, Strand, L, Styles, M, Phillips, C.
Deposit date:2011-06-06
Release date:2012-06-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Sulfonamides as Selective Oestrogen Receptor Beta Agonists.
Bioorg.Med.Chem.Lett., 21, 2011
2YB8
DownloadVisualize
BU of 2yb8 by Molmil
Crystal structure of Nurf55 in complex with Su(z)12
Descriptor: POLYCOMB PROTEIN SU(Z)12, PROBABLE HISTONE-BINDING PROTEIN CAF1, SULFATE ION
Authors:Schmitges, F.W, Prusty, A.B, Faty, M, Stutzer, A, Lingaraju, G.M, Aiwazian, J, Sack, R, Hess, D, Li, L, Zhou, S, Bunker, R.D, Wirth, U, Bouwmeester, T, Bauer, A, Ly-Hartig, N, Zhao, K, Chan, H, Gu, J, Gut, H, Fischle, W, Muller, J, Thoma, N.H.
Deposit date:2011-03-02
Release date:2011-05-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Histone Methylation by Prc2 is Inhibited by Active Chromatin Marks.
Mol.Cell, 42, 2011
6NXV
DownloadVisualize
BU of 6nxv by Molmil
Crystal structure of the theta class glutathione S-transferase from the citrus canker pathogen Xanthomonas axonopodis pv. citri, apo form
Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, Glutathione S-transferase
Authors:Hilario, E, De Keyser, S, Fan, L.
Deposit date:2019-02-10
Release date:2020-03-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural and biochemical characterization of a glutathione transferase from the citrus canker pathogen Xanthomonas.
Acta Crystallogr D Struct Biol, 76, 2020
6O15
DownloadVisualize
BU of 6o15 by Molmil
Crystal structure of a putative oxidoreductase YjhC from Escherichia coli in complex with NAD(H)
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, Uncharacterized oxidoreductase YjhC
Authors:Horne, C.R, Kind, L, Davies, J.S, Dobson, R.C.
Deposit date:2019-02-17
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:On the structure and function of Escherichia coli YjhC: An oxidoreductase involved in bacterial sialic acid metabolism.
Proteins, 88, 2020
6O2Q
DownloadVisualize
BU of 6o2q by Molmil
Acetylated Microtubules
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Eshun-Wilson, L, Zhang, R, Portran, D, Nachury, M.V, Toso, D, Lohr, T, Vendruscolo, M, Bonomi, M, Fraser, J.S, Nogales, E.
Deposit date:2019-02-24
Release date:2019-05-22
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Effects of alpha-tubulin acetylation on microtubule structure and stability.
Proc.Natl.Acad.Sci.USA, 116, 2019
2Z2D
DownloadVisualize
BU of 2z2d by Molmil
Solution structure of human macrophage elastase (MMP-12) catalytic domain complexed with a gamma-keto butanoic acid inhibitor
Descriptor: (3R)-3-{4-[(4-CHLOROPHENYL)ETHYNYL]BENZOYL}NONANOIC ACID, CALCIUM ION, Macrophage metalloelastase, ...
Authors:Zheng, X, Ou, L.
Deposit date:2007-05-18
Release date:2007-11-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of human macrophage elastase (MMP-12) catalytic domain complexed with a gamma-keto butanoic acid inhibitor
To be published
6O3N
DownloadVisualize
BU of 6o3n by Molmil
Cross-alpha Amyloid-like Structure alphaAmA
Descriptor: Cross-alpha Amyloid-like Structure alphaAmA
Authors:Zhang, S.-Q, Liu, L, DeGrado, W.F.
Deposit date:2019-02-26
Release date:2019-03-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Designed peptides that assemble into cross-alpha amyloid-like structures
Nat. Chem. Biol., 14, 2018
2Z4E
DownloadVisualize
BU of 2z4e by Molmil
Crystal Structure of D-Dimer from Human Fibrin Complexed with Gly-His-Arg-Pro-Tyr-amide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Doolittle, R.F, Pandi, L.
Deposit date:2007-06-16
Release date:2007-10-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Probing the beta-chain hole of fibrinogen with synthetic peptides that differ at their amino termini
Biochemistry, 46, 2007
8JZN
DownloadVisualize
BU of 8jzn by Molmil
Structure of a fungal 1,3-beta-glucan synthase
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 1,3-beta-glucan synthase component FKS1, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhao, C, You, Z, Chen, D, Hang, J, Wang, Z, Meng, J, Wang, L, Zhao, P, Qiao, J, Yun, C, Bai, L.
Deposit date:2023-07-05
Release date:2023-10-04
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (2.47 Å)
Cite:Structure of a fungal 1,3-beta-glucan synthase.
Sci Adv, 9, 2023
2Z6M
DownloadVisualize
BU of 2z6m by Molmil
Crystal structure of Human Ferritin H8 as biotemplate for noble metal nanoparticle synthesis
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Ferritin heavy chain, ...
Authors:Di Costanzo, L, Christianson, D.W.
Deposit date:2007-08-04
Release date:2008-07-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Directing noble metal ion chemistry within a designed ferritin protein
Biochemistry, 47, 2008
8K7A
DownloadVisualize
BU of 8k7a by Molmil
Cryo-EM structure of nucleotide-bound ComA E647Q mutant with Mg2+
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Transport/processing ATP-binding protein ComA
Authors:Yu, L, Xin, X, Min, L.
Deposit date:2023-07-26
Release date:2023-10-11
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural basis of peptide secretion for Quorum sensing by ComA.
Nat Commun, 14, 2023
3BDR
DownloadVisualize
BU of 3bdr by Molmil
Crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus elongatus. Northeast Structural Genomics Consortium target TeR13.
Descriptor: PHOSPHATE ION, Ycf58 protein
Authors:Kuzin, A.P, Su, M, Seetharaman, J, Forouhar, F, Wang, D, Janjua, H, Cunningham, K, Ma, L.-C, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-11-15
Release date:2007-11-27
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus elongatus.
To be Published
3BEW
DownloadVisualize
BU of 3bew by Molmil
10mer Crystal Structure of chicken MHC class I haplotype B21
Descriptor: 10-mer from Tubulin beta-6 chain, Beta-2-microglobulin, Major histocompatibility complex class I glycoprotein haplotype B21
Authors:Koch, M, Camp, S, Collen, T, Avila, D, Salomonsen, J, Wallny, H.J, van Hateren, A, Hunt, L, Jacob, J.P, Johnston, F, Marston, D.A, Shaw, I, Dunbar, P.R, Cerundolo, V, Jones, E.Y, Kaufman, J.
Deposit date:2007-11-20
Release date:2008-01-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of an MHC class I molecule from b21 chickens illustrate promiscuous Peptide binding
Immunity, 27, 2007

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon