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2HWN
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BU of 2hwn by Molmil
Crystal Structure of RII alpha Dimerization/Docking domain of PKA bound to the D-AKAP2 peptide
Descriptor: A Kinase binding peptide, GLYCEROL, cAMP-dependent protein kinase type II-alpha regulatory subunit
Authors:Kinderman, F, Kim, C.
Deposit date:2006-08-01
Release date:2006-11-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Dynamic Mechanism for AKAP Binding to RII Isoforms of cAMP-Dependent Protein Kinase.
Mol.Cell, 24, 2006
2K9J
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BU of 2k9j by Molmil
Integrin alphaIIb-beta3 transmembrane complex
Descriptor: Integrin alpha-IIb light chain, Integrin beta-3
Authors:Lau, T, Kim, C, Ginsberg, M.H, Ulmer, T.S.
Deposit date:2008-10-15
Release date:2009-03-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The structure of the integrin alphaIIbbeta3 transmembrane complex explains integrin transmembrane signalling
Embo J., 28, 2009
2L8E
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BU of 2l8e by Molmil
Solution NMR structure of FCS domain of Human Polyhomeotic Homolog 1 (HPH1)
Descriptor: Polyhomeotic-like protein 1, ZINC ION
Authors:Ilangovan, U, Kim, C.
Deposit date:2011-01-11
Release date:2011-12-21
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:1H, 15N and 13C assigned chemical shifts of FCS domain from human polyhomeotic homolog 1
To be Published
4OJK
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BU of 4ojk by Molmil
Structure of the cGMP Dependent Protein Kinase II and Rab11b Complex
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Ras-related protein Rab-11B, cGMP-dependent protein kinase 2
Authors:Reger, A.S, Yang, M.P, Guo, E, Kim, C.
Deposit date:2014-01-21
Release date:2014-08-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.657 Å)
Cite:Crystal Structure of the cGMP-dependent Protein Kinase II Leucine Zipper and Rab11b Protein Complex Reveals Molecular Details of G-kinase-specific Interactions.
J.Biol.Chem., 289, 2014
4R4L
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BU of 4r4l by Molmil
Crystal structure of wt cGMP dependent protein kinase I alpha (PKGI alpha) leucine zipper
Descriptor: HEXANE-1,6-DIOL, SULFATE ION, cGMP-dependent protein kinase 1
Authors:Reger, A.S, Guo, E, Yang, M.P, Qin, L, Kim, C.
Deposit date:2014-08-19
Release date:2015-09-23
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.245 Å)
Cite:Structures of cGMP-Dependent Protein Kinase (PKG) I alpha Leucine Zippers Reveal an Interchain Disulfide Bond Important for Dimer Stability.
Biochemistry, 54, 2015
4R4M
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BU of 4r4m by Molmil
Crystal structure of C42L cGMP dependent protein kinase I alpha (PKGI alpha) leucine zipper
Descriptor: SULFATE ION, cGMP-dependent protein kinase 1
Authors:Reger, A.S, Guo, E, Yang, M.P, Qin, L, Kim, C.
Deposit date:2014-08-19
Release date:2015-09-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.922 Å)
Cite:Structures of cGMP-Dependent Protein Kinase (PKG) I alpha Leucine Zippers Reveal an Interchain Disulfide Bond Important for Dimer Stability.
Biochemistry, 54, 2015
4QX5
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BU of 4qx5 by Molmil
Neutron diffraction reveals hydrogen bonds critical for cGMP-selective activation: Insights for PKG agonist design
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, IODIDE ION, cGMP-dependent protein kinase 1
Authors:Huang, G.Y, Gerlits, O.O, Blakeley, M.P, Sankaran, B, Kovalevsky, A.Y, Kim, C.
Deposit date:2014-07-18
Release date:2014-11-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.318 Å)
Cite:Neutron Diffraction Reveals Hydrogen Bonds Critical for cGMP-Selective Activation: Insights for cGMP-Dependent Protein Kinase Agonist Design.
Biochemistry, 53, 2014
7CM4
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BU of 7cm4 by Molmil
Crystal Structure of COVID-19 virus spike receptor-binding domain complexed with a neutralizing antibody CT-P59
Descriptor: 1,2-ETHANEDIOL, IgG heavy chain, IgG light chain, ...
Authors:Kim, Y.G, Jeong, J.H, Bae, J.S, Lee, J.
Deposit date:2020-07-24
Release date:2021-01-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:A therapeutic neutralizing antibody targeting receptor binding domain of SARS-CoV-2 spike protein.
Nat Commun, 12, 2021
3PNA
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BU of 3pna by Molmil
Crystal Structure of cAMP bound (91-244)RIa Subunit of cAMP-dependent Protein Kinase
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, GLYCEROL, cAMP-dependent protein kinase type I-alpha regulatory subunit
Authors:Kim, C, Taylor, S.
Deposit date:2010-11-18
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.503 Å)
Cite:Cyclic AMP Analog Blocks Kinase Activation by Stabilizing Inactive Conformation: Conformational Selection Highlights a New Concept in Allosteric Inhibitor Design.
Mol Cell Proteomics, 10, 2011
2L91
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BU of 2l91 by Molmil
Structure of the Integrin beta3 (A711P,K716A) Transmembrane Segment
Descriptor: Integrin beta-3
Authors:Schmidt, T, Ulmer, T.S.
Deposit date:2011-01-27
Release date:2011-12-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Basic amino-acid side chains regulate transmembrane integrin signalling.
Nature, 481, 2012
5X42
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BU of 5x42 by Molmil
Structure of DotL(590-659)-DotN derived from Legionella pneumophila
Descriptor: DotN, IcmJ (DotN), IcmO (DotL), ...
Authors:Kwak, M.J, Kim, J.D, Oh, B.H.
Deposit date:2017-02-09
Release date:2017-06-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Architecture of the type IV coupling protein complex of Legionella pneumophila
Nat Microbiol, 2, 2017
7O4C
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BU of 7o4c by Molmil
Crystal structure of PASTA domains of the Penicillin-Binding Protein 1 (PBP1) from Staphylococcus aureus
Descriptor: CHLORIDE ION, Penicillin-binding protein 1
Authors:Martinez Caballero, S, Hermoso, J.A.
Deposit date:2021-04-05
Release date:2021-11-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Integrative structural biology of the penicillin-binding protein-1 from Staphylococcus aureus , an essential component of the divisome machinery.
Comput Struct Biotechnol J, 19, 2021
7O4A
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BU of 7o4a by Molmil
Crystal structure of Penicillin-Binding Protein 1 (PBP1) from Staphylococcus aureus in complex with piperacillin
Descriptor: Hydrolyzed piperacillin, Penicillin-binding protein 1
Authors:Martinez Caballero, S, Hermoso, J.A.
Deposit date:2021-04-05
Release date:2021-11-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.028 Å)
Cite:Integrative structural biology of the penicillin-binding protein-1 from Staphylococcus aureus , an essential component of the divisome machinery.
Comput Struct Biotechnol J, 19, 2021
7O49
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BU of 7o49 by Molmil
Crystal structure of Penicillin-Binding Protein 1 (PBP1) from Staphylococcus aureus
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CADMIUM ION, CHLORIDE ION, ...
Authors:Martinez Caballero, S, Hermoso, J.A.
Deposit date:2021-04-05
Release date:2021-11-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Integrative structural biology of the penicillin-binding protein-1 from Staphylococcus aureus , an essential component of the divisome machinery.
Comput Struct Biotechnol J, 19, 2021
7NS6
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BU of 7ns6 by Molmil
SARS-CoV-2 Spike (dimers) in complex with six Fu2 nanobodies
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fu2 nanobody, Spike glycoprotein,Fibritin, ...
Authors:Das, H, Hallberg, B.M.
Deposit date:2021-03-05
Release date:2022-02-02
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:A bispecific monomeric nanobody induces spike trimer dimers and neutralizes SARS-CoV-2 in vivo.
Nat Commun, 13, 2022
4XZZ
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BU of 4xzz by Molmil
Structure of Helicobacter pylori Csd6 in the ligand-free state
Descriptor: Conserved hypothetical secreted protein, GLYCEROL
Authors:Kim, H.S, Im, H.N, Yoon, H.J, Suh, S.W.
Deposit date:2015-02-05
Release date:2015-09-02
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:The Cell Shape-determining Csd6 Protein from Helicobacter pylori Constitutes a New Family of l,d-Carboxypeptidase
J.Biol.Chem., 290, 2015
8V4F
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BU of 8v4f by Molmil
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Descriptor: CAB-A17 variable heavy-chain, CAB-A17 variable light chain, Spike protein S1
Authors:Hallberg, B.M, Das, H.
Deposit date:2023-11-29
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Structural basis of broad SARS-CoV-2 cross-neutralization by affinity-matured public antibodies.
Cell Rep Med, 2024
5JD7
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BU of 5jd7 by Molmil
PKG I's Carboxyl Terminal Cyclic Nucleotide Binding Domain (CNB-B) in a complex with PET-cGMP
Descriptor: 3-[(2S,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxotetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-6-phenyl-3,4-dihydro-9H-imidazo[1,2-a]purin-9-one, cGMP-dependent protein kinase 1
Authors:Campbell, J.C, Sankaran, B, Kim, C.W.
Deposit date:2016-04-15
Release date:2017-08-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.749 Å)
Cite:Structural Basis of Analog Specificity in PKG I and II.
ACS Chem. Biol., 12, 2017
5JAX
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BU of 5jax by Molmil
PKG I's Carboyl Terminal Cyclic Nucleotide Binding Domain (CNB-B) in a complex with 8-Br-cGMP
Descriptor: 2-amino-8-bromo-9-[(2R,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxotetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-1,9-dihydro-6H-purin-6-one, CALCIUM ION, SODIUM ION, ...
Authors:Campbell, J.C, Sankaran, B, Kim, C.W.
Deposit date:2016-04-12
Release date:2017-04-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.486 Å)
Cite:Structural Basis of Analog Specificity in PKG I and II.
ACS Chem. Biol., 12, 2017
5JIX
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BU of 5jix by Molmil
PKG II's Carboxyl Terminal Cyclic Nucleotide Binding Domain (CNB-B) in a complex with 8-Br-cGMP
Descriptor: 1,2-ETHANEDIOL, 2-amino-8-bromo-9-[(2R,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxotetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-1,9-dihydro-6H-purin-6-one, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ...
Authors:Campbell, J.C, Kim, C.W.
Deposit date:2016-04-22
Release date:2017-05-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Structural Basis of Analog Specificity in PKG I and II.
ACS Chem. Biol., 12, 2017
3U3A
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BU of 3u3a by Molmil
structure of Human Carbonic Anhydrase II V143I
Descriptor: Carbonic anhydrase 2, GLYCEROL, ZINC ION
Authors:West, D, Mckenna, R.
Deposit date:2011-10-05
Release date:2012-10-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.549 Å)
Cite:Structural Analysis of Human Carbonic Anhydrase II Binding Pocket
To be Published
8WA0
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BU of 8wa0 by Molmil
The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC1
Descriptor: DNA (48-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Wu, X.X, Zhang, Y.
Deposit date:2023-09-06
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structures of the plant plastid-encoded RNA polymerase.
Cell, 187, 2024
8WA1
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BU of 8wa1 by Molmil
The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC2
Descriptor: DNA (24-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Wu, X.X, Zhang, Y.
Deposit date:2023-09-06
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structures of the plant plastid-encoded RNA polymerase.
Cell, 187, 2024
8W9Z
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BU of 8w9z by Molmil
The cryo-EM structure of the Nicotiana tabacum PEP-PAP
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta'', ...
Authors:Wu, X.X, Zhang, Y.
Deposit date:2023-09-06
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-EM structures of the plant plastid-encoded RNA polymerase.
Cell, 187, 2024
8BEX
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BU of 8bex by Molmil
Structure of the Lysinibacillus sphaericus Tpp49Aa1 pesticidal protein at pH 3
Descriptor: Cry49Aa protein
Authors:Williamson, L.J, Rizkallah, P.J, Berry, C, Oberthur, D, Galchenkova, M, Yefanov, O, Bean, R.
Deposit date:2022-10-22
Release date:2023-11-01
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structure of the Lysinibacillus sphaericus Tpp49Aa1 pesticidal protein elucidated from natural crystals using MHz-SFX.
Proc.Natl.Acad.Sci.USA, 120, 2023

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