Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6WLE
DownloadVisualize
BU of 6wle by Molmil
Crystal structure of the Zeitlupe light-state mimic G46A
Descriptor: 1,2-ETHANEDIOL, Adagio protein 1, FLAVIN MONONUCLEOTIDE
Authors:Zoltowski, B, Green, R.
Deposit date:2020-04-20
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Steric and Electronic Interactions at Gln154 in ZEITLUPE Induce Reorganization of the LOV Domain Dimer Interface.
Biochemistry, 60, 2021
6WLP
DownloadVisualize
BU of 6wlp by Molmil
Crystal Structure of the ZTL light-state mimic G46S
Descriptor: 1,2-ETHANEDIOL, Adagio protein 1, FLAVIN MONONUCLEOTIDE
Authors:Zoltowski, B, Green, R.
Deposit date:2020-04-20
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Steric and Electronic Interactions at Gln154 in ZEITLUPE Induce Reorganization of the LOV Domain Dimer Interface.
Biochemistry, 60, 2021
4QLH
DownloadVisualize
BU of 4qlh by Molmil
Crystal structure of drug resistant V82S/V1082S HIV-1 Protease
Descriptor: Protease, linker
Authors:Das, A, Raskar, T, Hosur, M.V.
Deposit date:2014-06-12
Release date:2014-08-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of drug resistant V82S/V1082S HIV-1 Protease
To be Published
7UNN
DownloadVisualize
BU of 7unn by Molmil
Thiol-disulfide oxidoreductase TsdA from Corynebacterium diphtheriae
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Thioredoxin domain-containing protein
Authors:Osipiuk, J, Reardon-Robinson, M, Nguyen, M.T, Sanchez, B, Ton-That, H, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2022-04-11
Release date:2022-04-20
Last modified:2023-05-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A cryptic oxidoreductase safeguards oxidative protein folding in Corynebacterium diphtheriae.
Proc.Natl.Acad.Sci.USA, 120, 2023
5C00
DownloadVisualize
BU of 5c00 by Molmil
MdbA protein, a thiol-disulfide oxidoreductase from Corynebacterium diphtheriae
Descriptor: MdbA protein
Authors:OSIPIUK, J, REARDON-ROBINSON, M.E, TON-THAT, H, JOACHIMIAK, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-06-11
Release date:2015-07-15
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:A thiol-disulfide oxidoreductase of the Gram-positive pathogen Corynebacterium diphtheriae is essential for viability, pilus assembly, toxin production and virulence.
Mol.Microbiol., 98, 2015
5E5J
DownloadVisualize
BU of 5e5j by Molmil
Joint X-ray/neutron structure of HIV-1 protease triple mutant (V32I,I47V,V82I) with darunavir at pH 6.0
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, Protease
Authors:Kovalevsky, A.Y, Gerlits, O.O.
Deposit date:2015-10-08
Release date:2016-05-04
Last modified:2024-03-06
Method:NEUTRON DIFFRACTION (1.85 Å), X-RAY DIFFRACTION
Cite:Long-Range Electrostatics-Induced Two-Proton Transfer Captured by Neutron Crystallography in an Enzyme Catalytic Site.
Angew.Chem.Int.Ed.Engl., 55, 2016
8T28
DownloadVisualize
BU of 8t28 by Molmil
The crystal structure of SrtC2 sortase from Actinomyces oris
Descriptor: CHLORIDE ION, Class C sortase, PHOSPHATE ION
Authors:Osipiuk, J, Chang, C, Ton-That, H.L, Ton-That, H, Joachimiak, A, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2023-06-05
Release date:2024-04-17
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular basis for dual functions in pilus assembly modulated by the lid of a pilus-specific sortase.
J.Biol.Chem., 300, 2024
7CPH
DownloadVisualize
BU of 7cph by Molmil
Crystal structure of tRNA adenosine deaminase from Bacillus subtilis
Descriptor: GLYCEROL, ZINC ION, tRNA-specific adenosine deaminase
Authors:Gaded, V, Mariam, J, Anand, R.
Deposit date:2020-08-07
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Deciphering protein microenvironment by using a cysteine specific switch-ON fluorescent probe.
Org.Biomol.Chem., 19, 2021
7LTM
DownloadVisualize
BU of 7ltm by Molmil
Hum8 capsid
Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, Capsid protein
Authors:Mietzsch, M, Agbandje-McKenna, M.
Deposit date:2021-02-19
Release date:2021-07-07
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.49 Å)
Cite:Receptor Switching in Newly Evolved Adeno-associated Viruses.
J.Virol., 95, 2021
5UTT
DownloadVisualize
BU of 5utt by Molmil
SrtA sortase from Actinomyces oris
Descriptor: CHLORIDE ION, Sortase
Authors:Osipiuk, J, Ma, X, Ton-That, H, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-02-15
Release date:2017-03-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Cell-to-cell interaction requires optimal positioning of a pilus tip adhesin modulated by gram-positive transpeptidase enzymes.
Proc.Natl.Acad.Sci.USA, 116, 2019
8D1V
DownloadVisualize
BU of 8d1v by Molmil
Cryo-EM structure of guide RNA and target RNA bound Cas7-11
Descriptor: CRISPR RNA (34-MER), CRISPR-associated RAMP family protein, SS target RNA (5'-R(P*AP*GP*CP*UP*UP*GP*GP*UP*UP*CP*AP*AP*AP*GP*AP*AP*CP*G)-3'), ...
Authors:Rai, J, Goswami, H, Li, H.
Deposit date:2022-05-27
Release date:2022-11-02
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Molecular mechanism of active Cas7-11 in processing CRISPR RNA and interfering target RNA.
Elife, 11, 2022
5VO0
DownloadVisualize
BU of 5vo0 by Molmil
Structure of a TRAF6-Ubc13~Ub complex
Descriptor: POTASSIUM ION, TNF receptor-associated factor 6, Ubiquitin, ...
Authors:Middleton, A.J, Day, C.L.
Deposit date:2017-05-01
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:The activity of TRAF RING homo- and heterodimers is regulated by zinc finger 1.
Nat Commun, 8, 2017
5VNZ
DownloadVisualize
BU of 5vnz by Molmil
Structure of a TRAF6-Ubc13~Ub complex
Descriptor: TNF receptor-associated factor 6, Ubiquitin, Ubiquitin-conjugating enzyme E2 N, ...
Authors:Middleton, A.J, Day, C.L.
Deposit date:2017-05-01
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.41 Å)
Cite:The activity of TRAF RING homo- and heterodimers is regulated by zinc finger 1.
Nat Commun, 8, 2017
4Z7X
DownloadVisualize
BU of 4z7x by Molmil
MdbA protein, a thiol-disulfide oxidoreductase from Actinomyces oris.
Descriptor: (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid, MdbA
Authors:OSIPIUK, J, Reardon-Robinson, M.E, Ton-That, H, JOACHIMIAK, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-04-08
Release date:2015-04-22
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:A Disulfide Bond-forming Machine Is Linked to the Sortase-mediated Pilus Assembly Pathway in the Gram-positive Bacterium Actinomyces oris.
J.Biol.Chem., 290, 2015
5YX6
DownloadVisualize
BU of 5yx6 by Molmil
Crystal structure of Rv3272 from M. tuberculosis orthorhombic form
Descriptor: BENZAMIDINE, GLYCEROL, Uncharacterized protein Rv3272
Authors:Ansari, A, Shrimant, K.S, Venkatesh Pratap, J.
Deposit date:2017-12-01
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Rv3272 encodes a novel Family III CoA transferase that alters the cell wall lipid profile and protects mycobacteria from acidic and oxidative stress.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
3QDH
DownloadVisualize
BU of 3qdh by Molmil
Crystal structure of Actinomyces fimbrial adhesin FimA
Descriptor: Fimbrial structural subunit, ZINC ION
Authors:Devarajan, B, Krishnan, V, Narayana, S.V.L.
Deposit date:2011-01-18
Release date:2011-08-24
Last modified:2011-09-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two autonomous structural modules in the fimbrial shaft adhesin FimA mediate Actinomyces interactions with streptococci and host cells during oral biofilm development.
Mol.Microbiol., 81, 2011
5YIY
DownloadVisualize
BU of 5yiy by Molmil
Crystal structure of D175A mutant of Rv3272 from Mycobacterium tuberculosis
Descriptor: CHLORIDE ION, CoA transferase
Authors:Karade, S.S, Pratap, J.V.
Deposit date:2017-10-06
Release date:2018-11-07
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.504 Å)
Cite:Rv3272 encodes a novel Family III CoA transferase that alters the cell wall lipid profile and protects mycobacteria from acidic and oxidative stress.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
5YIT
DownloadVisualize
BU of 5yit by Molmil
Crystal Structure of Hypothetical protein (Rv3272) from Mycobacterium tuberculosis
Descriptor: CoA transferase III
Authors:Karade, S.S, Pratap, J.V.
Deposit date:2017-10-06
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Rv3272 encodes a novel Family III CoA transferase that alters the cell wall lipid profile and protects mycobacteria from acidic and oxidative stress.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
1QM9
DownloadVisualize
BU of 1qm9 by Molmil
NMR, REPRESENTATIVE STRUCTURE
Descriptor: POLYPYRIMIDINE TRACT-BINDING PROTEIN
Authors:Conte, M.R, Grune, T, Curry, S, Matthews, S.
Deposit date:1999-09-22
Release date:2000-07-03
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of Tandem RNA Recognition Motifs from Polypyrimidine Tract Binding Protein Reveals Novel Features of the Rrm Fold
Embo J., 19, 2000
5K9A
DownloadVisualize
BU of 5k9a by Molmil
Sortase A from Corynebacterium diphtheriae
Descriptor: Putative fimbrial associated sortase-like protein, SULFATE ION
Authors:Osipiuk, J, Huang, I.-H, Ma, X, Ton-That, H, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-05-31
Release date:2016-06-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:In vitro reconstitution of sortase-catalyzed pilus polymerization reveals structural elements involved in pilin cross-linking.
Proc.Natl.Acad.Sci.USA, 115, 2018
3Q3Q
DownloadVisualize
BU of 3q3q by Molmil
Crystal Structure of SPAP: an novel alkaline phosphatase from bacterium Sphingomonas sp. strain BSAR-1
Descriptor: Alkaline phosphatase, CALCIUM ION, GLYCEROL, ...
Authors:Bihani, S.C, Hosur, M.V.
Deposit date:2010-12-22
Release date:2011-12-28
Method:X-RAY DIFFRACTION (1.953 Å)
Cite:X-ray structure reveals a new class and provides insight into evolution of alkaline phosphatases
Plos One, 6, 2011
8IOI
DownloadVisualize
BU of 8ioi by Molmil
Crystal Structure of PadR- family transcriptional regulator Rv1176c from Mycobacterium tuberculosis H37Rv.
Descriptor: CHLORIDE ION, GLYCEROL, HEXAETHYLENE GLYCOL, ...
Authors:Yadav, V, Zohib, M, Pal, R.K, Biswal, B.K, Arora, A.
Deposit date:2023-03-11
Release date:2024-03-13
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Structural and biophysical characterization of PadR family protein Rv1176c of Mycobacterium tuberculosis H37Rv.
Int.J.Biol.Macromol., 263, 2024
6BWE
DownloadVisualize
BU of 6bwe by Molmil
Sortase A from Corynebacterium diphtheriae, lid mutant
Descriptor: Putative fimbrial associated sortase-like protein
Authors:Osipiuk, J, Chang, C, Huang, I.H, Ton-That, H, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-12-14
Release date:2017-12-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:In vitro reconstitution of sortase-catalyzed pilus polymerization reveals structural elements involved in pilin cross-linking.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4IB3
DownloadVisualize
BU of 4ib3 by Molmil
Structure of cAMP dependent protein kinase A in complex with ADP, phosphorylated peptide pSP20, and no metal
Descriptor: ADENOSINE-5'-DIPHOSPHATE, cAMP-dependent protein kinase catalytic subunit alpha, phosphorylated pseudo-substrate peptide pSP20
Authors:Gerlits, O, Kovalevsky, A.
Deposit date:2012-12-07
Release date:2013-12-11
Last modified:2014-05-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Metal-Free cAMP-Dependent Protein Kinase Can Catalyze Phosphoryl Transfer.
Biochemistry, 53, 2014
4IB1
DownloadVisualize
BU of 4ib1 by Molmil
Structure of cAMP dependent protein kinase A in complex with high K+ concentration, ADP and phosphorylated peptide pSP20
Descriptor: ADENOSINE-5'-DIPHOSPHATE, POTASSIUM ION, cAMP-dependent protein kinase catalytic subunit alpha, ...
Authors:Gerlits, O, Kovalevsky, A.
Deposit date:2012-12-07
Release date:2013-12-11
Last modified:2014-05-28
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Metal-Free cAMP-Dependent Protein Kinase Can Catalyze Phosphoryl Transfer.
Biochemistry, 53, 2014

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon