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5DFE
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BU of 5dfe by Molmil
70S termination complex containing E. coli RF2
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Hoffer, E.D, Dunham, C.M.
Deposit date:2015-08-26
Release date:2016-10-12
Last modified:2025-03-19
Method:X-RAY DIFFRACTION (3.09997559 Å)
Cite:Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.
Cell Rep, 17, 2016
7N8Y
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BU of 7n8y by Molmil
Oxidized PheRS G318W from Salmonella enterica serovar Typhimurium
Descriptor: Phenylalanine--tRNA ligase alpha subunit, Phenylalanine--tRNA ligase beta subunit
Authors:Srinivas, P, Dunham, C.M.
Deposit date:2021-06-16
Release date:2021-10-06
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:Oxidation alters the architecture of the phenylalanyl-tRNA synthetase editing domain to confer hyperaccuracy.
Nucleic Acids Res., 49, 2021
9CG6
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BU of 9cg6 by Molmil
70S initiation complex (tRNA-fMet M1 + GUG start codon)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
Deposit date:2024-06-28
Release date:2024-09-18
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 300, 2024
5IWH
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BU of 5iwh by Molmil
Structure of P. vulgaris HigB toxin delta H92
Descriptor: CHLORIDE ION, Endoribonuclease HigB
Authors:Schureck, M.A, Repack, A.A, Miles, S.J, Marquez, J, Dunham, C.M.
Deposit date:2016-03-22
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.101 Å)
Cite:Mechanism of endonuclease cleavage by the HigB toxin.
Nucleic Acids Res., 44, 2016
5IXL
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BU of 5ixl by Molmil
Structure of P. vulgaris HigB toxin Y91A variant
Descriptor: CHLORIDE ION, Endoribonuclease HigB
Authors:Schureck, M.A, Repack, A.A, Miles, S.J, Marquez, J, Dunham, C.M.
Deposit date:2016-03-23
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Mechanism of endonuclease cleavage by the HigB toxin.
Nucleic Acids Res., 44, 2016
9CG7
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BU of 9cg7 by Molmil
70S initiation complex (tRNA-fMet M1 + AUG start codon)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
Deposit date:2024-06-28
Release date:2024-09-18
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 300, 2024
9CG5
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BU of 9cg5 by Molmil
70S initiation complex (tRNA-fMet M1 + UUG start codon)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
Deposit date:2024-06-28
Release date:2024-09-18
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 300, 2024
9CHN
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BU of 9chn by Molmil
P. vulgaris trimeric HigBA- operator 2 DNA
Descriptor: Antitoxin HigA, DNA (5'-D(*GP*TP*AP*TP*TP*AP*CP*AP*CP*AP*CP*CP*AP*TP*GP*TP*AP*AP*TP*AP*C)-3'), DNA (5'-D(*GP*TP*AP*TP*TP*AP*CP*AP*TP*GP*GP*TP*GP*TP*GP*TP*AP*AP*TP*AP*C)-3'), ...
Authors:Pavelich, I.J, Schureck, M.A, Hoffer, E.D, Dunham, C.M.
Deposit date:2024-07-01
Release date:2025-07-02
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:P. vulgaris trimeric HigBA- operator 2 DNA
To Be Published
9CHL
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BU of 9chl by Molmil
P. vulgaris tetrameric HigBA- operator 2 DNA
Descriptor: Antitoxin HigA, CHLORIDE ION, DNA (5'-D(*GP*TP*AP*TP*TP*AP*CP*AP*CP*AP*CP*CP*AP*TP*GP*TP*AP*AP*TP*AP*C)-3'), ...
Authors:Pavelich, I.J, Schureck, M.A, Hoffer, E.D, Dunham, C.M.
Deposit date:2024-07-01
Release date:2025-07-02
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:P. vulgaris tetrameric HigBA- operator 2 DNA
To Be Published
5J3C
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BU of 5j3c by Molmil
Thermus thermophilus 70S termination complex containing E. coli RF1
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Hoffer, E.D, Dunham, C.M.
Deposit date:2016-03-30
Release date:2016-10-12
Last modified:2025-03-19
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.
Cell Rep, 17, 2016
5J30
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BU of 5j30 by Molmil
Thermus thermophilus 70S termination complex containing E. coli RF1
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Hoffer, E.D, Dunham, C.M.
Deposit date:2016-03-30
Release date:2016-10-12
Last modified:2025-03-19
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.
Cell Rep, 17, 2016
8UTJ
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BU of 8utj by Molmil
E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S11, ...
Authors:Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
Deposit date:2023-10-31
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
8URM
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BU of 8urm by Molmil
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Descriptor: 13S ribosomal RNA, 16S ribosomal RNA, 30S ribosomal protein S11, ...
Authors:Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
Deposit date:2023-10-26
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (3 Å)
Cite:An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
8UX8
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BU of 8ux8 by Molmil
E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame
Descriptor: 16S ribosomal RNA, 23S rRNA, 30S ribosomal protein S11, ...
Authors:Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
Deposit date:2023-11-09
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
8UXB
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BU of 8uxb by Molmil
E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
Deposit date:2023-11-09
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
8UZ3
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BU of 8uz3 by Molmil
E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
Deposit date:2023-11-14
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
8V03
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BU of 8v03 by Molmil
E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S11, ...
Authors:Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
Deposit date:2023-11-16
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (4 Å)
Cite:An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
8UZG
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BU of 8uzg by Molmil
E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
Deposit date:2023-11-15
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
5UCT
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BU of 5uct by Molmil
Mycobacterium tuberculosis toxin MazF-mt6
Descriptor: Endoribonuclease MazF3, SULFATE ION
Authors:Hoffer, E.H, Dunham, C.M.
Deposit date:2016-12-22
Release date:2017-03-22
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structure and function of Mycobacterium tuberculosis MazF-mt6 toxin provide insights into conserved features of MazF endonucleases.
J. Biol. Chem., 292, 2017
4YY3
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BU of 4yy3 by Molmil
30S ribosomal subunit- HigB complex
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Schureck, M.A, Maehigashi, T, Dunham, C.M.
Deposit date:2015-03-23
Release date:2016-07-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:mRNA bound to the 30S subunit is a HigB toxin substrate.
Rna, 22, 2016
5UQ7
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BU of 5uq7 by Molmil
70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ("in" conformation)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Zhang, Y, Hong, S, Skiniotis, G, Dunham, C.M.
Deposit date:2017-02-07
Release date:2018-03-07
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Alternative Mode of E-Site tRNA Binding in the Presence of a Downstream mRNA Stem Loop at the Entrance Channel.
Structure, 26, 2018
4YZV
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BU of 4yzv by Molmil
Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Schureck, M.A, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
Deposit date:2015-03-25
Release date:2015-10-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Defining the mRNA recognition signature of a bacterial toxin protein.
Proc.Natl.Acad.Sci.USA, 112, 2015
5UQ8
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BU of 5uq8 by Molmil
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ("out" conformation)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Zhang, Y, Hong, S, Skiniotis, G, Dunham, C.M.
Deposit date:2017-02-07
Release date:2018-03-07
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Alternative Mode of E-Site tRNA Binding in the Presence of a Downstream mRNA Stem Loop at the Entrance Channel.
Structure, 26, 2018
4ZSN
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BU of 4zsn by Molmil
70S-wild-type HigB toxin complex bound to a AAA lysine codon
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Schureck, M.A, Dunham, C.M.
Deposit date:2015-05-13
Release date:2016-09-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Mechanism of endonuclease cleavage by the HigB toxin.
Nucleic Acids Res., 44, 2016
5VPO
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BU of 5vpo by Molmil
The 70S P-site ASL SufA6 complex
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Hong, S, Sunita, S, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
Deposit date:2017-05-05
Release date:2018-09-26
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018

238582

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