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5YS2
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BU of 5ys2 by Molmil
Structure of the domain IV(D_IV) of Pseudorabies virus glycoprotein B( PRV gB)
Descriptor: Envelope glycoprotein B,Envelope glycoprotein B
Authors:Hu, X.L, Yang, F.L.
Deposit date:2017-11-12
Release date:2017-12-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.698 Å)
Cite:Two classes of protective antibodies against Pseudorabies virus variant glycoprotein B: Implications for vaccine design.
PLoS Pathog., 13, 2017
7YSX
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BU of 7ysx by Molmil
Crystal structure of PDE4D complexed with licoisoflavone A
Descriptor: 1,2-ETHANEDIOL, 3-[3-(3-methylbut-2-enyl)-2,4-bis(oxidanyl)phenyl]-5,7-bis(oxidanyl)chromen-4-one, MAGNESIUM ION, ...
Authors:Liu, J.Y, Li, M.J, Xu, Y.C.
Deposit date:2022-08-13
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Bioactive compounds from Huashi Baidu decoction possess both antiviral and anti-inflammatory effects against COVID-19.
Proc.Natl.Acad.Sci.USA, 120, 2023
8XR7
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BU of 8xr7 by Molmil
Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 avian influenza virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin
Authors:Sun, J, Zheng, T.Y.
Deposit date:2024-01-06
Release date:2025-01-15
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 low pathogenicity avian influenza virus.
Nat Commun, 15, 2024
7YQF
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BU of 7yqf by Molmil
Crystal structure of PDE4D complexed with glycyrrhisoflavone
Descriptor: 1,2-ETHANEDIOL, 3-[3-(3-methylbut-2-enyl)-4,5-bis(oxidanyl)phenyl]-5,7-bis(oxidanyl)chromen-4-one, MAGNESIUM ION, ...
Authors:Liu, J.Y, Li, M.J, Xu, Y.C.
Deposit date:2022-08-06
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Bioactive compounds from Huashi Baidu decoction possess both antiviral and anti-inflammatory effects against COVID-19.
Proc.Natl.Acad.Sci.USA, 120, 2023
8XRD
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BU of 8xrd by Molmil
Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 avian influenza virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
Authors:Sun, J, Zheng, T.Y.
Deposit date:2024-01-06
Release date:2025-01-15
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 low pathogenicity avian influenza virus.
Nat Commun, 15, 2024
8XRB
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BU of 8xrb by Molmil
Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 avian influenza virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin
Authors:Sun, J, Zheng, T.Y.
Deposit date:2024-01-06
Release date:2025-01-15
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (2.49 Å)
Cite:Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 low pathogenicity avian influenza virus.
Nat Commun, 15, 2024
8XRA
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BU of 8xra by Molmil
Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 avian influenza virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, N-acetyl-alpha-neuraminic acid, ...
Authors:Sun, J, Zheng, T.Y.
Deposit date:2024-01-06
Release date:2025-01-15
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.31 Å)
Cite:Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 low pathogenicity avian influenza virus.
Nat Commun, 15, 2024
8XRC
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BU of 8xrc by Molmil
Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 avian influenza virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
Authors:Sun, J, Zheng, T.Y.
Deposit date:2024-01-06
Release date:2025-01-15
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 low pathogenicity avian influenza virus.
Nat Commun, 15, 2024
8XR9
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BU of 8xr9 by Molmil
Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 avian influenza virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose
Authors:Sun, J, Zheng, T.Y.
Deposit date:2024-01-06
Release date:2025-01-15
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 low pathogenicity avian influenza virus.
Nat Commun, 15, 2024
8XR8
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BU of 8xr8 by Molmil
Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 avian influenza virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
Authors:Sun, J, Zheng, T.Y.
Deposit date:2024-01-06
Release date:2025-01-15
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 low pathogenicity avian influenza virus.
Nat Commun, 15, 2024
5YMT
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BU of 5ymt by Molmil
Functional and structural characterization of P[19] rotavirus VP8* interaction with histo-blood group antigens
Descriptor: Outer capsid protein VP4, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
Authors:Sun, X, Duan, Z.
Deposit date:2017-10-22
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Glycan Binding Specificity and Mechanism of Human and Porcine P[6]/P[19] Rotavirus VP8*s.
J. Virol., 92, 2018
5YSL
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BU of 5ysl by Molmil
Crystal structure of antibody 1H1 Fab
Descriptor: 1H1 heavy chain, 1H1 light chain
Authors:Hu, X.L, Yang, F.L.
Deposit date:2017-11-14
Release date:2017-12-27
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Two classes of protective antibodies against Pseudorabies virus variant glycoprotein B: Implications for vaccine design.
PLoS Pathog., 13, 2017
5YMS
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BU of 5yms by Molmil
Structural basis of glycan specificity and identification of a novel glycan binding cavity in human P[19] rotavirus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Outer capsid protein VP4, beta-D-galactopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose
Authors:Sun, X, Dandi, L, Duan, Z.
Deposit date:2017-10-22
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Glycan Binding Specificity and Mechanism of Human and Porcine P[6]/P[19] Rotavirus VP8*s.
J. Virol., 92, 2018
8YZR
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BU of 8yzr by Molmil
The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYNYLYRLL(EG.5.1)
Descriptor: Beta-2-microglobulin, MHC class I antigen, Spike protein S1
Authors:Min, L, Liu, J.
Deposit date:2024-04-08
Release date:2025-01-29
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:T cell immune evasion by SARS-CoV-2 JN.1 escapees targeting two cytotoxic T cell epitope hotspots.
Nat.Immunol., 26, 2025
8YZZ
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BU of 8yzz by Molmil
The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYNYLYRLF(Prototype)
Descriptor: Beta-2-microglobulin, MHC class I antigen, Spike protein S1
Authors:Shang, B.L, Zhang, J.N, Tian, J.M, Liu, J.
Deposit date:2024-04-08
Release date:2025-01-29
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:T cell immune evasion by SARS-CoV-2 JN.1 escapees targeting two cytotoxic T cell epitope hotspots.
Nat.Immunol., 26, 2025
8Z07
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BU of 8z07 by Molmil
The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYNYRYRLF(Delta/BA.5.2)
Descriptor: Beta-2-microglobulin, MHC class I antigen, Spike protein S2'
Authors:Yuechao, H, Liu, J.
Deposit date:2024-04-09
Release date:2025-01-29
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:T cell immune evasion by SARS-CoV-2 JN.1 escapees targeting two cytotoxic T cell epitope hotspots.
Nat.Immunol., 26, 2025
8Z06
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BU of 8z06 by Molmil
The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYDYWYRSF(JN.1)
Descriptor: Beta-2-microglobulin, MHC class I antigen, Spike protein S2'
Authors:Tian, J.M, Liu, J.
Deposit date:2024-04-09
Release date:2025-01-29
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:T cell immune evasion by SARS-CoV-2 JN.1 escapees targeting two cytotoxic T cell epitope hotspots.
Nat.Immunol., 26, 2025
8Z05
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BU of 8z05 by Molmil
The structure of HLA-A*0201 complex with peptide from SARS-CoV-2 N222-230 LLLDRLNKL(BA.2.86/JN.1)
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, A alpha chain, ...
Authors:Zhang, J.N, Tian, J.M, Liu, J.
Deposit date:2024-04-09
Release date:2025-01-29
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:T cell immune evasion by SARS-CoV-2 JN.1 escapees targeting two cytotoxic T cell epitope hotspots.
Nat.Immunol., 26, 2025
7ZSD
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BU of 7zsd by Molmil
cryo-EM structure of omicron spike in complex with de novo designed binder, local
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, de novo designed binder
Authors:Pablo, G, Sarah, W, Alexandra, V.H, Anthony, M, Andreas, S, Zander, H, Dongchun, N, Shuguang, T, Freyr, S, Casper, G, Priscilla, T, Alexandra, T, Stephane, R, Sandrine, G, Jane, M, Aaron, P, Zepeng, X, Yan, C, Pu, H, George, G, Elisa, O, Beat, F, Didier, T, Henning, S, Michael, B, Bruno, E.C.
Deposit date:2022-05-06
Release date:2023-03-01
Last modified:2023-05-24
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:De novo design of protein interactions with learned surface fingerprints.
Nature, 617, 2023
7ZSS
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BU of 7zss by Molmil
cryo-EM structure of D614 spike in complex with de novo designed binder
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Pablo, G, Sarah, W, Alexandra, V.H, Anthony, M, Andreas, S, Zander, H, Dongchun, N, Shuguang, T, Freyr, S, Casper, G, Priscilla, T, Alexandra, T, Stephane, R, Sandrine, G, Jane, M, Aaron, P, Zepeng, X, Yan, C, Pu, H, George, G, Elisa, O, Beat, F, Didier, T, Henning, S, Michael, B, Bruno, E.C.
Deposit date:2022-05-08
Release date:2023-03-01
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.63 Å)
Cite:De novo design of protein interactions with learned surface fingerprints.
Nature, 617, 2023
7ZRV
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BU of 7zrv by Molmil
cryo-EM structure of omicron spike in complex with de novo designed binder, full map
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Envelope glycoprotein, ...
Authors:Pablo, G, Sarah, W, Alexandra, V.H, Anthony, M, Andreas, S, Zander, H, Dongchun, N, Shuguang, T, Freyr, S, Casper, G, Priscilla, T, Alexandra, T, Stephane, R, Sandrine, G, Jane, M, Aaron, P, Zepeng, X, Yan, C, Pu, H, George, G, Elisa, O, Beat, F, Didier, T, Henning, S, Michael, B, Bruno, E.C.
Deposit date:2022-05-05
Release date:2023-03-08
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:De novo design of protein interactions with learned surface fingerprints.
Nature, 617, 2023
8Y0Y
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BU of 8y0y by Molmil
Cryo-EM structure of the 123-316 scDb/PT-RBD complex
Descriptor: 123-316 scDb, 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Jia, G.W, Tong, Z, Tong, J.Y, Su, Z.M.
Deposit date:2024-01-23
Release date:2024-07-17
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Deciphering a reliable synergistic bispecific strategy of rescuing antibodies for SARS-CoV-2 escape variants, including BA.2.86, EG.5.1, and JN.1.
Cell Rep, 43, 2024
8XG2
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BU of 8xg2 by Molmil
The structure of HLA-A/Pep14
Descriptor: Beta-2-microglobulin, HLA class I heavy chain, Spike protein S1
Authors:Zhang, J.N, Yue, C, Liu, J.
Deposit date:2023-12-14
Release date:2024-07-10
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Uncommon P1 Anchor-featured Viral T Cell Epitope Preference within HLA-A*2601 and HLA-A*0101 Individuals.
Immunohorizons, 8, 2024
8XKE
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BU of 8xke by Molmil
The structure of HLA-A/14-3-D
Descriptor: Beta-2-microglobulin, GLU-VAL-ASP-ASN-ALA-THR-ARG-PHE-ALA-SER-VAL-TYR, HLA class I heavy chain
Authors:Zhang, J.N, Yue, C, Liu, J, Sun, Z.Y.
Deposit date:2023-12-23
Release date:2024-07-10
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Uncommon P1 Anchor-featured Viral T Cell Epitope Preference within HLA-A*2601 and HLA-A*0101 Individuals.
Immunohorizons, 8, 2024
8XFZ
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BU of 8xfz by Molmil
The structure of HLA-A/L1-2
Descriptor: Beta-2-microglobulin, HLA class I heavy chain, Major capsid protein L1
Authors:Zhang, J.N, Yue, C, Liu, J.
Deposit date:2023-12-14
Release date:2024-07-10
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Uncommon P1 Anchor-featured Viral T Cell Epitope Preference within HLA-A*2601 and HLA-A*0101 Individuals.
Immunohorizons, 8, 2024

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PDB entries from 2025-07-09

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