Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5HH7
DownloadVisualize
BU of 5hh7 by Molmil
crystal structure of Arabidopsis ORC1b BAH-PHD cassette in complex with unmodified H3 peptide
Descriptor: Histone H3 1-15 peptide, Origin of replication complex subunit 1B, ZINC ION
Authors:Li, S, Du, J.
Deposit date:2016-01-10
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette
Structure, 24, 2016
4GVT
DownloadVisualize
BU of 4gvt by Molmil
Crystal structure of D48V mutant of human GLTP bound with 12:0 disulfatide (hexagonal form)
Descriptor: Glycolipid transfer protein, N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide
Authors:Samygina, V.R, Cabo-Bilbao, A, Goni-de-Cerio, F, Popov, A.N, Malinina, L.
Deposit date:2012-08-31
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insights into lipid-dependent reversible dimerization of human GLTP.
Acta Crystallogr.,Sect.D, 69, 2013
4GXG
DownloadVisualize
BU of 4gxg by Molmil
Crystal structure of human GLTP bound with 12:0 monosulfatide (orthorhombic form; four subunits in asymmetric unit)
Descriptor: Glycolipid transfer protein, N-{(2S,3R,4E)-3-hydroxy-1-[(3-O-sulfo-beta-D-galactopyranosyl)oxy]octadec-4-en-2-yl}dodecanamide
Authors:Samygina, V.R, Cabo-Bilbao, A, Goni-de-Cerio, F, Popov, A.N, Malinina, L.
Deposit date:2012-09-04
Release date:2013-04-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights into lipid-dependent reversible dimerization of human GLTP.
Acta Crystallogr.,Sect.D, 69, 2013
4GXD
DownloadVisualize
BU of 4gxd by Molmil
Crystal structure of D48V mutant of human GLTP bound with 12:0 disulfatide
Descriptor: Glycolipid transfer protein, N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide
Authors:Samygina, V.R, Ochoa-Lizarralde, B, Popov, A.N, Malinina, L.
Deposit date:2012-09-04
Release date:2013-04-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insights into lipid-dependent reversible dimerization of human GLTP.
Acta Crystallogr.,Sect.D, 69, 2013
4GJQ
DownloadVisualize
BU of 4gjq by Molmil
Crystal structure of human GLTP bound with 12:0 monosulfatide (orthorhombic form;two subunits in asymmetric unit)
Descriptor: (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE, Glycolipid transfer protein, HEXANE
Authors:Cabo-Bilbao, A, Goni-de-Cerio, F, Samygina, V.R, Ochoa-Lizarralde, B, Popov, A.N, Malinina, L.
Deposit date:2012-08-10
Release date:2013-06-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into lipid-dependent reversible dimerization of human GLTP.
Acta Crystallogr.,Sect.D, 69, 2013
4GH0
DownloadVisualize
BU of 4gh0 by Molmil
Crystal structure of D48V mutant of human GLTP bound with 12:0 monosulfatide
Descriptor: Glycolipid transfer protein, N-{(2S,3R,4E)-3-hydroxy-1-[(3-O-sulfo-beta-D-galactopyranosyl)oxy]octadec-4-en-2-yl}dodecanamide, PENTADECANE
Authors:Samygina, V.R, Cabo-Bilbao, A, Ochoa-Lizarralde, B, Popov, A.N, Malinina, L.
Deposit date:2012-08-07
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural insights into lipid-dependent reversible dimerization of human GLTP.
Acta Crystallogr.,Sect.D, 69, 2013
4H2Z
DownloadVisualize
BU of 4h2z by Molmil
Crystal structure of human GLTP bound with 12:0 monosulfatide
Descriptor: Glycolipid transfer protein, N-{(2S,3R,4E)-3-hydroxy-1-[(3-O-sulfo-beta-D-galactopyranosyl)oxy]octadec-4-en-2-yl}dodecanamide, PENTADECANE, ...
Authors:Samygina, V.R, Ochoa-Lizarralde, B, Malinina, L.
Deposit date:2012-09-13
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural insights into lipid-dependent reversible dimerization of human GLTP.
Acta Crystallogr.,Sect.D, 69, 2013
4KPY
DownloadVisualize
BU of 4kpy by Molmil
DNA binding protein and DNA complex structure
Descriptor: DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*CP*C)-3'), DNA (5'-D(P*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3'), DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3'), ...
Authors:Sheng, G, Zhao, H, Wang, J, Rao, Y, Wang, Y.
Deposit date:2013-05-14
Release date:2014-01-29
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.406 Å)
Cite:Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage.
Proc.Natl.Acad.Sci.USA, 111, 2014
2GDI
DownloadVisualize
BU of 2gdi by Molmil
Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate
Descriptor: MAGNESIUM ION, POTASSIUM ION, SODIUM ION, ...
Authors:Serganov, A.
Deposit date:2006-03-16
Release date:2006-07-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch.
Nature, 441, 2006
7LMK
DownloadVisualize
BU of 7lmk by Molmil
Crystal structure of bovine DNMT1 BAH1 domain in complex with H4K20me3
Descriptor: DNA (cytosine-5)-methyltransferase 1, Histone H4, ZINC ION
Authors:Ren, W, Song, J.
Deposit date:2021-02-05
Release date:2021-02-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.647 Å)
Cite:DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation.
Nat Commun, 12, 2021
7LMM
DownloadVisualize
BU of 7lmm by Molmil
Crystal structure of bovine DNMT1 BAH1 domain in complex with H4K20me2
Descriptor: DNA (cytosine-5)-methyltransferase 1,DNA (cytosine-5)-methyltransferase 1, Histone H4, ZINC ION
Authors:Ren, W, Song, J.
Deposit date:2021-02-05
Release date:2021-02-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.798 Å)
Cite:DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation.
Nat Commun, 12, 2021
6PZV
DownloadVisualize
BU of 6pzv by Molmil
Crystal Structure of Bovine DNMT1 RFTS domain in complex with H3K9me3 and Ubiquitin
Descriptor: CITRATE ANION, DNA (cytosine-5)-methyltransferase 1, Histone H3.3, ...
Authors:Ren, W, Song, J.
Deposit date:2019-08-01
Release date:2020-07-15
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Direct readout of heterochromatic H3K9me3 regulates DNMT1-mediated maintenance DNA methylation.
Proc.Natl.Acad.Sci.USA, 117, 2020
9C3G
DownloadVisualize
BU of 9c3g by Molmil
human cGAS core domain (K427E/K428E) bound to Cladophorol A
Descriptor: Cyclic GMP-AMP synthase, ZINC ION, cladophorol A
Authors:Kissai, M, Stanfield, R.L, Lairson, L.L.
Deposit date:2024-05-31
Release date:2025-03-05
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Cladophorol-A is an inhibitor of cyclic GMP-AMP synthase.
Bioorg.Med.Chem.Lett., 115, 2025
4QUC
DownloadVisualize
BU of 4quc by Molmil
Crystal structure of chromodomain of Rhino
Descriptor: RE36324p
Authors:Li, S, Patel, D.J.
Deposit date:2014-07-10
Release date:2014-08-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing.
Genes Dev., 28, 2014
4QUF
DownloadVisualize
BU of 4quf by Molmil
crystal structure of chromodomain of Rhino with H3K9me3
Descriptor: H3(1-15)K9me3 peptide, RE36324p
Authors:Li, S, Patel, D.J.
Deposit date:2014-07-10
Release date:2014-08-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing.
Genes Dev., 28, 2014
6MUS
DownloadVisualize
BU of 6mus by Molmil
Cryo-EM structure of larger Csm-crRNA-target RNA ternary complex in type III-A CRISPR-Cas system
Descriptor: RNA (25-MER), RNA (33-MER), Uncharacterized protein Csm1, ...
Authors:Jia, N, Wang, C, Eng, E.T.
Deposit date:2018-10-23
Release date:2018-12-12
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Type III-A CRISPR-Cas Csm Complexes: Assembly, Periodic RNA Cleavage, DNase Activity Regulation, and Autoimmunity.
Mol. Cell, 73, 2019
3DIM
DownloadVisualize
BU of 3dim by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Cs+ Soak
Descriptor: CESIUM ION, ISOPROPYL ALCOHOL, LYSINE, ...
Authors:Serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DJ2
DownloadVisualize
BU of 3dj2 by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Tl+ Soak
Descriptor: ISOPROPYL ALCOHOL, LYSINE, RNA (174-MER), ...
Authors:Serganov, A.A.
Deposit date:2008-06-21
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIG
DownloadVisualize
BU of 3dig by Molmil
CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO S-(2-aminoethyl)-L-cysteine
Descriptor: ISOPROPYL ALCOHOL, L-THIALYSINE, POTASSIUM ION, ...
Authors:Serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIX
DownloadVisualize
BU of 3dix by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, K+ anomalous data
Descriptor: LYSINE, POTASSIUM ION, RNA (174-MER), ...
Authors:Serganov, A.A.
Deposit date:2008-06-21
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIR
DownloadVisualize
BU of 3dir by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to N6-1-iminoethyl-L-Lysine
Descriptor: N~6~-[(1Z)-ethanimidoyl]-L-lysine, POTASSIUM ION, RNA (174-MER), ...
Authors:Serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIL
DownloadVisualize
BU of 3dil by Molmil
Crystal structure of the Thermotoga maritima lysine riboswitch bound to lysine
Descriptor: ISOPROPYL ALCOHOL, LYSINE, MAGNESIUM ION, ...
Authors:Serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DJ0
DownloadVisualize
BU of 3dj0 by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to L-4-oxalysine
Descriptor: O-(2-aminoethyl)-L-serine, POTASSIUM ION, RNA (174-MER), ...
Authors:Serganov, A.A.
Deposit date:2008-06-21
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIS
DownloadVisualize
BU of 3dis by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch in free form
Descriptor: ISOPROPYL ALCOHOL, RNA (174-MER), SODIUM ION
Authors:Serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3DIY
DownloadVisualize
BU of 3diy by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Mn2+ soak
Descriptor: LYSINE, MANGANESE (II) ION, POTASSIUM ION, ...
Authors:Serganov, A.A.
Deposit date:2008-06-21
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008

239149

PDB entries from 2025-07-23

PDB statisticsPDBj update infoContact PDBjnumon