Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6UCO
DownloadVisualize
BU of 6uco by Molmil
Backbone-modified variant of zinc finger 2 from the transcription factor Sp1 DNA binding domain: BTD in the metal-binding turn
Descriptor: Transcription factor Sp1, ZINC ION
Authors:Rao, S.R, Horne, W.S.
Deposit date:2019-09-17
Release date:2020-06-24
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Proteomimetic Zinc Finger Domains with Modified Metal-binding beta-Turns.
Pept Sci (Hoboken), 112, 2020
6UCP
DownloadVisualize
BU of 6ucp by Molmil
Zinc finger 2 from the transcription factor Sp1 DNA binding domain
Descriptor: Transcription factor Sp1, ZINC ION
Authors:Rao, S.R, Horne, W.S.
Deposit date:2019-09-17
Release date:2020-06-24
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Proteomimetic Zinc Finger Domains with Modified Metal-binding beta-Turns.
Pept Sci (Hoboken), 112, 2020
6E5H
DownloadVisualize
BU of 6e5h by Molmil
Heterogeneous-Backbone Mimics of a Designed Disulfide-Rich Protein: Aib turn
Descriptor: Designed peptide NC_HEE_D1: Aib turn mutant
Authors:Cabalteja, C.C, Mihalko, D.S, Horne, W.S.
Deposit date:2018-07-20
Release date:2018-11-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Heterogeneous-Backbone Foldamer Mimics of a Computationally Designed, Disulfide-Rich Miniprotein.
Chembiochem, 20, 2019
6WYA
DownloadVisualize
BU of 6wya by Molmil
RTX (Reverse Transcription Xenopolymerase) in complex with a DNA duplex and dAMPNPP
Descriptor: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Choi, W.S, He, P, Pothukuchy, A, Gollihar, J, Ellington, A.D, Yang, W.
Deposit date:2020-05-12
Release date:2020-08-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:How a B family DNA polymerase has been evolved to copy RNA.
Proc.Natl.Acad.Sci.USA, 117, 2020
6WYB
DownloadVisualize
BU of 6wyb by Molmil
RTX (Reverse Transcription Xenopolymerase) in complex with an RNA/DNA hybrid
Descriptor: 1,2-ETHANEDIOL, 3,3',3''-phosphanetriyltripropanoic acid, DNA polymerase, ...
Authors:Choi, W.S, He, P, Pothukuchy, A, Gollihar, J, Ellington, A.D, Yang, W.
Deposit date:2020-05-12
Release date:2020-08-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:How a B family DNA polymerase has been evolved to copy RNA.
Proc.Natl.Acad.Sci.USA, 117, 2020
6E5I
DownloadVisualize
BU of 6e5i by Molmil
Heterogeneous-Backbone Mimics of a Designed Disulfide-Rich Protein: Orn turn
Descriptor: Designed peptide NC_HEE_D1: Orn turn mutant
Authors:Cabalteja, C.C, Mihalko, D.S, Horne, W.S.
Deposit date:2018-07-20
Release date:2018-11-21
Last modified:2020-01-01
Method:SOLUTION NMR
Cite:Heterogeneous-Backbone Foldamer Mimics of a Computationally Designed, Disulfide-Rich Miniprotein.
Chembiochem, 20, 2019
6H2B
DownloadVisualize
BU of 6h2b by Molmil
Structure of the Macrobrachium rosenbergii Nodavirus
Descriptor: CALCIUM ION, Capsid protein
Authors:Ho, K.H, Gabrielsen, M, Beh, P.L, Kueh, C.L, Thong, Q.X, Streetley, J, Tan, W.S, Bhella, D.
Deposit date:2018-07-13
Release date:2018-10-31
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Structure of the Macrobrachium rosenbergii nodavirus: A new genus within the Nodaviridae?
PLoS Biol., 16, 2018
7E8Z
DownloadVisualize
BU of 7e8z by Molmil
Crystal structure of the human fat mass and obesity associated protein (FTO) in complex with SS81
Descriptor: 2-[[6-[(4-nitrophenyl)amino]-3-oxidanyl-pyridin-2-yl]carbonylamino]ethanoic acid, Alpha-ketoglutarate-dependent dioxygenase FTO, ZINC ION
Authors:Tam, N.Y, Ng, Y.M, Shishodia, S, McDonough, M.A, Schofield, C.J, Aik, W.S.
Deposit date:2021-03-03
Release date:2021-10-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure-Based Design of Selective Fat Mass and Obesity Associated Protein (FTO) Inhibitors.
J.Med.Chem., 64, 2021
7FHC
DownloadVisualize
BU of 7fhc by Molmil
Structure of prenyltransferase mutant V49W from Streptomyces sp. (strain CL190)
Descriptor: Prenyltransferase
Authors:Xue, B, Lim, K.J.H, Hartono, Y.D, Go, M.D.K, Fan, H, Yew, W.S.
Deposit date:2021-07-29
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure-Guided Engineering of Prenyltransferase NphB for High-Yield and Regioselective Cannabinoid Production.
Acs Catalysis, 12, 2022
7FHB
DownloadVisualize
BU of 7fhb by Molmil
Structure of prenyltransferase from Streptomyces sp. (strain CL190) with bound GPP
Descriptor: GERANYL DIPHOSPHATE, Prenyltransferase
Authors:Xue, B, Lim, K.J.H, Hartono, Y.D, Go, M.D.K, Fan, H, Yew, W.S.
Deposit date:2021-07-29
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-Guided Engineering of Prenyltransferase NphB for High-Yield and Regioselective Cannabinoid Production.
Acs Catalysis, 12, 2022
7FHD
DownloadVisualize
BU of 7fhd by Molmil
Structure of prenyltransferase mutant Y288P from Streptomyces sp. (strain CL190)
Descriptor: Prenyltransferase
Authors:Xue, B, Lim, K.J.H, Hartono, Y.D, Go, M.D.K, Fan, H, Yew, W.S.
Deposit date:2021-07-29
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure-Guided Engineering of Prenyltransferase NphB for High-Yield and Regioselective Cannabinoid Production.
Acs Catalysis, 12, 2022
7FHE
DownloadVisualize
BU of 7fhe by Molmil
Structure of prenyltransferase mutant Q295F from Streptomyces sp. (strain CL190)
Descriptor: Prenyltransferase
Authors:Xue, B, Lim, K.J.H, Hartono, Y.D, Go, M.D.K, Fan, H, Yew, W.S.
Deposit date:2021-07-29
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-Guided Engineering of Prenyltransferase NphB for High-Yield and Regioselective Cannabinoid Production.
Acs Catalysis, 12, 2022
7FHF
DownloadVisualize
BU of 7fhf by Molmil
Structure of prenyltransferase mutant V49W/Y288F/Q295F from Streptomyces sp. (strain CL190)
Descriptor: Prenyltransferase
Authors:Xue, B, Lim, K.J.H, Hartono, Y.D, Go, M.D.K, Fan, H, Yew, W.S.
Deposit date:2021-07-29
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-Guided Engineering of Prenyltransferase NphB for High-Yield and Regioselective Cannabinoid Production.
Acs Catalysis, 12, 2022
7DWM
DownloadVisualize
BU of 7dwm by Molmil
Crystal structure of the phage VqmA-DPO complex
Descriptor: 3,5-dimethylpyrazin-2-ol, Transcriptional regulator
Authors:Gu, Y, Yang, W.S.
Deposit date:2021-01-17
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Understanding the mechanism of asymmetric gene regulation determined by the VqmA of vibriophage.
Biochem.Biophys.Res.Commun., 558, 2021
8JZD
DownloadVisualize
BU of 8jzd by Molmil
Crystal structure of Escherichia coli NarJ in complex with the signal peptide of E. coli NarG
Descriptor: Nitrate reductase molybdenum cofactor assembly chaperone NarJ, Respiratory nitrate reductase 1 alpha chain
Authors:Song, W.S, Kim, J.H, Namgung, B, Cho, H.Y, Oh, H.B, Yoon, S.I.
Deposit date:2023-07-05
Release date:2024-05-15
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Complementary hydrophobic interaction of the redox enzyme maturation protein NarJ with the signal peptide of the respiratory nitrate reductase NarG.
Int.J.Biol.Macromol., 262, 2024
8JZC
DownloadVisualize
BU of 8jzc by Molmil
Crystal structure of Geobacillus stearothermophilus NarJ
Descriptor: Nitrate reductase molybdenum cofactor assembly chaperone
Authors:Song, W.S, Kim, J.H, Namgung, B, Cho, H.Y, Oh, H.B, Yoon, S.I.
Deposit date:2023-07-05
Release date:2024-05-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Complementary hydrophobic interaction of the redox enzyme maturation protein NarJ with the signal peptide of the respiratory nitrate reductase NarG.
Int.J.Biol.Macromol., 262, 2024
1HKG
DownloadVisualize
BU of 1hkg by Molmil
STRUCTURAL DYNAMICS OF YEAST HEXOKINASE DURING CATALYSIS
Descriptor: HEXOKINASE A
Authors:Bennett Jr, W.S, Steitz, T.A.
Deposit date:1980-12-22
Release date:1981-02-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural dynamics of yeast hexokinase during catalysis.
Philos.Trans.R.Soc.London,Ser.B, 293, 1981
5GY2
DownloadVisualize
BU of 5gy2 by Molmil
Crystal structure of a complex between Bacillus subtilis flagellin and zebrafish Toll-like receptor 5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Flagellin, ...
Authors:Song, W.S, Yoon, S.I.
Deposit date:2016-09-21
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A conserved TLR5 binding and activation hot spot on flagellin
Sci Rep, 7, 2017
5H5V
DownloadVisualize
BU of 5h5v by Molmil
Crystal structure of the flagellar cap protein FliD D1-D2-D3 domains from Escherichia coli
Descriptor: Flagellar hook-associated protein 2
Authors:Song, W.S, Cho, S.Y, Hong, H.J, Yoon, S.I.
Deposit date:2016-11-09
Release date:2017-02-22
Last modified:2017-04-05
Method:X-RAY DIFFRACTION (3 Å)
Cite:Self-Oligomerizing Structure of the Flagellar Cap Protein FliD and Its Implication in Filament Assembly.
J. Mol. Biol., 429, 2017
4A1U
DownloadVisualize
BU of 4a1u by Molmil
Crystal structure of alpha-beta-foldamer 2c in complex with Bcl-xL
Descriptor: ALPHA-BETA-FOLDAMER 2C, BCL-2-LIKE PROTEIN 1, CHLORIDE ION, ...
Authors:Boersma, M.D, Haase, H.S, Kaufman, K.J, Horne, W.S, Lee, E.F, Clarke, O.B, Smith, B.J, Colman, P.M, Gellman, S.H, Fairlie, W.D.
Deposit date:2011-09-20
Release date:2011-12-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Evaluation of Diverse Alpha/Beta-Backbone Patterns for Functional Alpha-Helix Mimicry: Analogues of the Bim Bh3 Domain.
J.Am.Chem.Soc., 134, 2012
4A1W
DownloadVisualize
BU of 4a1w by Molmil
Crystal structure of alpha-beta foldamer 4c in complex with Bcl-xL
Descriptor: ALPHA-BETA-FOLDAMER 2C, BCL-2-LIKE PROTEIN 1
Authors:Boersma, M.D, Haase, H.S, Kaufman, K.J, Horne, W.S, Lee, E.F, Clarke, O.B, Smith, B.J, Colman, P.M, Gellman, S.H, Fairlie, W.D.
Deposit date:2011-09-20
Release date:2011-12-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.497 Å)
Cite:Evaluation of Diverse Alpha/Beta-Backbone Patterns for Functional Alpha-Helix Mimicry: Analogues of the Bim Bh3 Domain.
J.Am.Chem.Soc., 134, 2012
5HFY
DownloadVisualize
BU of 5hfy by Molmil
Backbone Modifications in the Protein GB1 Helix: beta-2-Ala24, beta-3-Lys28, beta-3-Lys31, beta-3-Asn35
Descriptor: Immunoglobulin G-binding protein G
Authors:Tavenor, N.A, Reinert, Z.E, Lengyel, G.A, Griffith, B.D, Horne, W.S.
Deposit date:2016-01-07
Release date:2016-02-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Comparison of design strategies for alpha-helix backbone modification in a protein tertiary fold.
Chem.Commun.(Camb.), 52, 2016
5HG2
DownloadVisualize
BU of 5hg2 by Molmil
Backbone Modifications in the Protein GB1 Helix: beta-3-Ala24, beta-3-Lys28, beta-3-Lys31, beta-2-Asn35
Descriptor: GLYCEROL, Immunoglobulin G-binding protein G, MAGNESIUM ION
Authors:Tavenor, N.A, Reinert, Z.E, Lengyel, G.A, Griffith, B.D, Horne, W.S.
Deposit date:2016-01-07
Release date:2016-02-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Comparison of design strategies for alpha-helix backbone modification in a protein tertiary fold.
Chem.Commun.(Camb.), 52, 2016
5H5W
DownloadVisualize
BU of 5h5w by Molmil
Crystal structure of the flagellar cap protein FliD D2-D3 domains from Escherichia coli
Descriptor: Flagellar hook-associated protein 2
Authors:Song, W.S, Cho, S.Y, Hong, H.J, Yoon, S.I.
Deposit date:2016-11-09
Release date:2017-02-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Self-Oligomerizing Structure of the Flagellar Cap Protein FliD and Its Implication in Filament Assembly.
J. Mol. Biol., 429, 2017
5H5T
DownloadVisualize
BU of 5h5t by Molmil
Crystal structure of the flagellar cap protein FliD D2-D3 domains from Salmonella Typhimurium
Descriptor: Flagellar hook-associated protein 2
Authors:Song, W.S, Cho, S.Y, Hong, H.J, Yoon, S.I.
Deposit date:2016-11-09
Release date:2017-02-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Self-Oligomerizing Structure of the Flagellar Cap Protein FliD and Its Implication in Filament Assembly.
J. Mol. Biol., 429, 2017

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon