Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2D74
DownloadVisualize
BU of 2d74 by Molmil
Crystal structure of translation initiation factor aIF2betagamma heterodimer
Descriptor: Translation initiation factor 2 beta subunit, Translation initiation factor 2 gamma subunit, ZINC ION
Authors:Sokabe, M, Yao, M, Sakai, N, Toya, S, Tanaka, I.
Deposit date:2005-11-16
Release date:2006-07-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of archaeal translational initiation factor 2 betagamma-GDP reveals significant conformational change of the beta-subunit and switch 1 region.
Proc.Natl.Acad.Sci.USA, 103, 2006
2DCU
DownloadVisualize
BU of 2dcu by Molmil
Crystal structure of translation initiation factor aIF2betagamma heterodimer with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Translation initiation factor 2 beta subunit, ...
Authors:Sokabe, M, Yao, M, Sakai, N, Toya, S, Tanaka, I.
Deposit date:2006-01-16
Release date:2006-07-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure of archaeal translational initiation factor 2 betagamma-GDP reveals significant conformational change of the beta-subunit and switch 1 region.
Proc.Natl.Acad.Sci.USA, 103, 2006
2EK9
DownloadVisualize
BU of 2ek9 by Molmil
Aminopeptidase from Aneurinibacillus sp. strain AM-1 with Bestatin
Descriptor: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, Aminopeptidase, ISOPROPYL ALCOHOL, ...
Authors:Akioka, M, Nakano, H, Watanabe, K.
Deposit date:2007-03-22
Release date:2008-03-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural characterization of a novel bacterial aminopeptidase with an apical domain from aneurinibacillus sp. strain AM-1
To be published
3A76
DownloadVisualize
BU of 3a76 by Molmil
The crystal structure of LinA
Descriptor: GLYCEROL, Gamma-hexachlorocyclohexane dehydrochlorinase, SPERMIDINE
Authors:Okai, M, Kubota, K, Fukuda, M, Nagata, Y, Nagata, K, Tanokura, M.
Deposit date:2009-09-15
Release date:2010-09-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of g-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26
J.Mol.Biol., 2010
2EK8
DownloadVisualize
BU of 2ek8 by Molmil
Aminopeptidase from Aneurinibacillus sp. strain AM-1
Descriptor: Aminopeptidase, ISOPROPYL ALCOHOL, ZINC ION
Authors:Akioka, M, Nakano, H, Watanabe, K.
Deposit date:2007-03-22
Release date:2008-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of a novel bacterial aminopeptidase with an apical domain from aneurinibacillus sp. strain AM-1
To be published
2YYS
DownloadVisualize
BU of 2yys by Molmil
Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8
Descriptor: GLYCEROL, Proline iminopeptidase-related protein
Authors:Okai, M, Miyauchi, Y, Ebihara, A, Lee, W.C, Nagata, K, Tanokura, M.
Deposit date:2007-05-01
Release date:2008-02-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8
Proteins, 70, 2008
2ZZF
DownloadVisualize
BU of 2zzf by Molmil
Crystal structure of alanyl-tRNA synthetase without oligomerization domain
Descriptor: Alanyl-tRNA synthetase, ZINC ION
Authors:Sokabe, M, Ose, T, Tokunaga, K, Nakamura, A, Nureki, O, Yao, M, Tanaka, I.
Deposit date:2009-02-10
Release date:2009-07-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structure of alanyl-tRNA synthetase with editing domain.
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZZG
DownloadVisualize
BU of 2zzg by Molmil
Crystal structure of alanyl-tRNA synthetase in complex with 5''-O-(N-(L-alanyl)-sulfamyoxyl) adenine without oligomerization domain
Descriptor: '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE, Alanyl-tRNA synthetase, ZINC ION
Authors:Sokabe, M, Ose, T, Tokunaga, K, Nakamura, A, Nureki, O, Yao, M, Tanaka, I.
Deposit date:2009-02-10
Release date:2009-07-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The structure of alanyl-tRNA synthetase with editing domain.
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZZE
DownloadVisualize
BU of 2zze by Molmil
Crystal structure of alanyl-tRNA synthetase without oligomerization domain in lysine-methylated form
Descriptor: Alanyl-tRNA synthetase, ZINC ION
Authors:Sokabe, M, Ose, T, Tokunaga, K, Nakamura, A, Nureki, O, Yao, M, Tanaka, I.
Deposit date:2009-02-10
Release date:2009-07-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:The structure of alanyl-tRNA synthetase with editing domain.
Proc.Natl.Acad.Sci.USA, 106, 2009
7EN4
DownloadVisualize
BU of 7en4 by Molmil
Multi-state structure determination and dynamics analysis elucidate a new ubiquitin-recognition mechanism of yeast ubiquitin C-terminal hydrolase.
Descriptor: Ubiquitin carboxyl-terminal hydrolase YUH1
Authors:Okada, M, Tateishi, Y, Nojiri, E, Mikawa, T, Rajesh, S, Ogasawa, H, Ueda, T, Yagi, H, Kohno, T, Kigawa, T, Shimada, I, Guentert, P, Yutaka, I, Ikeya, T.
Deposit date:2021-04-15
Release date:2022-04-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Multi-state structure determination and dynamics analysis elucidate a new ubiquitin-recognition mechanism of yeast ubiquitin C-terminal hydrolase.
To Be Published
3WQ1
DownloadVisualize
BU of 3wq1 by Molmil
Structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus in complex with cello-oligosaccharide
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, Endoglucanase A, ...
Authors:Kataoka, M, Ishikawa, K.
Deposit date:2014-01-21
Release date:2015-02-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus in complex with cello-oligosaccharide
To be Published
3WQ0
DownloadVisualize
BU of 3wq0 by Molmil
Structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus in complex with gluco-oligosaccharide
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, Endoglucanase A, ...
Authors:Kataoka, M, Ishikawa, K.
Deposit date:2014-01-21
Release date:2015-02-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus in complex with gluco-oligosaccharide
To be Published
3WR0
DownloadVisualize
BU of 3wr0 by Molmil
Structure of hyperthermophilic family 12 endocellulase mutant from Pyrococcus furiosus
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, Endoglucanase A, ...
Authors:Kataoka, M, Ishikawa, K.
Deposit date:2014-02-06
Release date:2015-03-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Structure of hyperthermophilic family 12 endocellulase mutant from Pyrococcus furiosus
To be Published
3WQ7
DownloadVisualize
BU of 3wq7 by Molmil
New crystal form of the hyperthermophilic family 12 endo-cellulase from Pyrococcus furiosus
Descriptor: CALCIUM ION, Endoglucanase A, GLYCEROL
Authors:Kataoka, M, Ishikawa, K.
Deposit date:2014-01-23
Release date:2014-07-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:A new crystal form of a hyperthermophilic endocellulase.
Acta Crystallogr.,Sect.F, 70, 2014
3WXP
DownloadVisualize
BU of 3wxp by Molmil
Structure of hyperthermophilic family 12 endocellulase (E197A) from Pyrococcus furiosus in complex with cellobiose
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, Endoglucanase A, ...
Authors:Kataoka, M, Ishikawa, K.
Deposit date:2014-08-04
Release date:2015-11-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structure of hyperthermophilic family 12 endocellulase mutant (E197A) from Pyrococcus furiosus in complex with cellobiose
To be Published
3WT3
DownloadVisualize
BU of 3wt3 by Molmil
New crystal form of a hyperthermophilic endocellulase
Descriptor: CALCIUM ION, Endoglucanase A, GLYCEROL
Authors:Kataoka, M, Ishikawa, K.
Deposit date:2014-04-07
Release date:2015-04-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:A new crystal form of a hyperthermophilic endocellulase
To be Published
3WY6
DownloadVisualize
BU of 3wy6 by Molmil
Structure of hyperthermophilic family 12 endocellulase (E197A) from Pyrococcus furiosus in complex with laminaribiose
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, Endoglucanase A, ...
Authors:Kataoka, M, Ishikawa, K.
Deposit date:2014-08-20
Release date:2015-09-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of hyperthermophilic family 12 endocellulase (E197A) from Pyrococcus furiosus in complex with laminaribiose
To be Published
3D7A
DownloadVisualize
BU of 3d7a by Molmil
Crystal structure of DUF54 family protein PH1010 from hyperthermophilic archaea Pyrococcus horikoshii OT3
Descriptor: UPF0201 protein PH1010
Authors:Shirokane, M, Miyazono, K.I, Sawano, Y, Tanokura, M.
Deposit date:2008-05-20
Release date:2008-12-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the DUF54 family protein PH1010 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Proteins, 74, 2008
1V7O
DownloadVisualize
BU of 1v7o by Molmil
Alanyl-tRNA synthetase editing domain homologue protein from Pyrococcus horikoshii
Descriptor: alanyl-tRNA synthetase
Authors:Okada, A, Yao, M, Sokabe, M, Tanaka, I.
Deposit date:2003-12-18
Release date:2004-01-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Molecular basis of alanine discrimination in editing site
Proc.Natl.Acad.Sci.Usa, 102, 2005
3VGI
DownloadVisualize
BU of 3vgi by Molmil
The crystal structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, Endoglucanase A, ...
Authors:Kataoka, M, Kim, H.-W, Ishikawa, K.
Deposit date:2011-08-11
Release date:2012-09-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Atomic resolution of the crystal structure of the hyperthermophilic family 12 endocellulase and stabilizing role of the DxDxDG calcium-binding motif in Pyrococcus furiosus.
Febs Lett., 586, 2012
3WP3
DownloadVisualize
BU of 3wp3 by Molmil
Xylanase 11C from Talaromyces cellulolyticus (formerly known as Acremonium cellulolyticus)
Descriptor: Endo-1,4-beta-xylanase
Authors:Ishikawa, K, Inoue, H, Kataoka, M.
Deposit date:2014-01-09
Release date:2014-11-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structure of Talaromyces cellulolyticus (formerly known as Acremonium cellulolyticus) GH family 11 xylanase
Appl Biochem Biotechnol., 174, 2014
1PWL
DownloadVisualize
BU of 1pwl by Molmil
Crystal structure of human Aldose Reductase complexed with NADP and Minalrestat
Descriptor: 2[4-BROMO-2-FLUOROPHENYL)METHYL]-6-FLUOROSPIRO[ISOQUINOLINE-4-(1H),3'-PYRROLIDINE]-1,2',3,5'(2H)-TETRONE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, aldose reductase
Authors:El-Kabbani, O, Darmanin, C, Schneider, T.R, Hazemann, I, Ruiz, F, Oka, M, Joachimiak, A, Schulze-Briese, C, Tomizaki, T, Mitschler, A, Podjarny, A.
Deposit date:2003-07-02
Release date:2004-02-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Ultrahigh resolution drug design. II. Atomic resolution structures of human aldose reductase holoenzyme complexed with Fidarestat and Minalrestat: implications for the binding of cyclic imide inhibitors
PROTEINS, 55, 2004
1PWM
DownloadVisualize
BU of 1pwm by Molmil
Crystal structure of human Aldose Reductase complexed with NADP and Fidarestat
Descriptor: (2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4'-IMIDAZOLIDINE]-2',5'-DIONE, CHLORIDE ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:El-Kabbani, O, Darmanin, C, Schneider, T.R, Hazemann, I, Ruiz, F, Oka, M, Joachimiak, A, Schulze-Briese, C, Tomizaki, T, Mitschler, A, Podjarny, A.
Deposit date:2003-07-02
Release date:2004-02-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Ultrahigh resolution drug design. II. Atomic resolution structures of human aldose reductase holoenzyme complexed with Fidarestat and Minalrestat: implications for the binding of cyclic imide inhibitors
PROTEINS, 55, 2004
2AGT
DownloadVisualize
BU of 2agt by Molmil
Aldose Reductase Mutant Leu 300 Pro complexed with Fidarestat
Descriptor: (2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4'-IMIDAZOLIDINE]-2',5'-DIONE, Aldose reductase, CHLORIDE ION, ...
Authors:Petrova, T, Steuber, H, Hazemann, I, Cousido-Siah, A, Mitschler, A, Chung, R, Oka, M, Klebe, G, El-Kabbani, O, Joachimiak, A, Podjarny, A.
Deposit date:2005-07-27
Release date:2005-09-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1 Å)
Cite:Factorizing Selectivity Determinants of Inhibitor Binding toward Aldose and Aldehyde Reductases: Structural and Thermodynamic Properties of the Aldose Reductase Mutant Leu300Pro-Fidarestat Complex
J.Med.Chem., 48, 2005
1X97
DownloadVisualize
BU of 1x97 by Molmil
Crystal structure of Aldose Reductase complexed with 2R4S (Stereoisomer of Fidarestat, 2S4S)
Descriptor: (2R,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4'-IMIDAZOLIDINE]-2',5'-DIONE, Aldose Reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:El-Kabbani, O, Darmanin, C, Oka, M, Schulze-Briese, C, Tomizaki, T, Hazemann, I, Mitschler, A, Podjarny, A.
Deposit date:2004-08-19
Release date:2004-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:High-Resolution Structures of Human Aldose Reductase Holoenzyme in Complex with Stereoisomers of the Potent Inhibitor Fidarestat: Stereospecific Interaction between the Enzyme and a Cyclic Imide Type Inhibitor
J.Med.Chem., 47, 2004

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon