Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8HXZ
DownloadVisualize
BU of 8hxz by Molmil
Cryo-EM structure of Eaf3 CHD in complex with nucleosome
Descriptor: Chromatin modification-related protein EAF3, DNA (352-MER), Histone H2A, ...
Authors:Cui, H, Wang, H.
Deposit date:2023-01-05
Release date:2023-09-27
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of histone deacetylase complex Rpd3S bound to nucleosome.
Nat.Struct.Mol.Biol., 30, 2023
8XJV
DownloadVisualize
BU of 8xjv by Molmil
Structural basis for the linker histone H5-nucleosome binding and chromatin compaction
Descriptor: DNA, Histone H2A, Histone H2B 1.1, ...
Authors:Li, W.Y, Song, F, Zhu, P.
Deposit date:2023-12-22
Release date:2024-09-11
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for linker histone H5-nucleosome binding and chromatin fiber compaction.
Cell Res., 34, 2024
7Y77
DownloadVisualize
BU of 7y77 by Molmil
Crystal structure of rice NAL1
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Protein NARROW LEAF 1
Authors:Yan, J.J, Guan, Z.Y, Yin, P, Xiong, L.Z.
Deposit date:2022-06-21
Release date:2023-07-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Serine protease NAL1 exerts pleiotropic functions through degradation of TOPLESS-related corepressor in rice.
Nat.Plants, 9, 2023
5D6N
DownloadVisualize
BU of 5d6n by Molmil
Crystal structure of a mycobacterial protein
Descriptor: Acyl-CoA synthase
Authors:Li, W.J, Bi, L.J.
Deposit date:2015-08-12
Release date:2016-03-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Crystal structure of FadD32, an enzyme essential for mycolic acid biosynthesis in mycobacteria.
Sci Rep, 5, 2015
5I3L
DownloadVisualize
BU of 5i3l by Molmil
DPF3b in complex with H3K14ac peptide
Descriptor: 1,2-ETHANEDIOL, H3K14ac peptide, SODIUM ION, ...
Authors:Tempel, W, Liu, Y, Walker, J.R, Zhao, A, Qin, S, Loppnau, P, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2016-02-10
Release date:2016-02-24
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of DPF3b in complex with an acetylated histone peptide.
J.Struct.Biol., 195, 2016
8YW5
DownloadVisualize
BU of 8yw5 by Molmil
Cryo-EM structure of the retatrutide-bound human GCGR-Gs complex
Descriptor: Glucagon receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Li, W.Z, Zhou, Q.T, Cong, Z.T, Yuan, Q.N, Li, W.X, Zhao, F.H, Xu, H.E, Zhao, L.H, Yang, D.H, Wang, M.W.
Deposit date:2024-03-29
Release date:2024-08-07
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Structural insights into the triple agonism at GLP-1R, GIPR and GCGR manifested by retatrutide.
Cell Discov, 10, 2024
8YW3
DownloadVisualize
BU of 8yw3 by Molmil
Cryo-EM structure of the retatrutide-bound human GLP-1R-Gs complex
Descriptor: Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Li, W.Z, Zhou, Q.T, Cong, Z.T, Yuan, Q.N, Li, W.X, Zhao, F.H, Xu, H.E, Zhao, L.H, Yang, D.H, Wang, M.W.
Deposit date:2024-03-29
Release date:2024-09-18
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Structural insights into the triple agonism at GLP-1R, GIPR and GCGR manifested by retatrutide.
Cell Discov, 10, 2024
8YW4
DownloadVisualize
BU of 8yw4 by Molmil
Cryo-EM structure of the retatrutide-bound human GIPR-Gs complex
Descriptor: Gastric inhibitory polypeptide receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Li, W.Z, Zhou, Q.T, Cong, Z.T, Yuan, Q.N, Li, W.X, Zhao, F.H, Xu, H.E, Zhao, L.H, Yang, D.H, Wang, M.W.
Deposit date:2024-03-29
Release date:2024-09-18
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structural insights into the triple agonism at GLP-1R, GIPR and GCGR manifested by retatrutide.
Cell Discov, 10, 2024
7NAB
DownloadVisualize
BU of 7nab by Molmil
Crystal structure of human neutralizing mAb CV3-25 binding to SARS-CoV-2 S MPER peptide 1140-1165
Descriptor: CITRIC ACID, CV3-25 Fab Heavy Chain, CV3-25 Fab Light Chain, ...
Authors:Chen, Y, Tolbert, W.D, Pazgier, M.
Deposit date:2021-06-21
Release date:2021-12-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis and mode of action for two broadly neutralizing antibodies against SARS-CoV-2 emerging variants of concern.
Cell Rep, 38, 2022
4LGI
DownloadVisualize
BU of 4lgi by Molmil
N-terminal truncated NleC structure
Descriptor: Uncharacterized protein
Authors:Li, W.Q, Liu, Y.X, Sheng, X.L, Yan, C.Y, Wang, J.W.
Deposit date:2013-06-28
Release date:2014-01-15
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Structure and mechanism of a type III secretion protease, NleC
Acta Crystallogr.,Sect.D, 70, 2014
3TKJ
DownloadVisualize
BU of 3tkj by Molmil
Crystal Structure of Human Asparaginase-like Protein 1 Thr168Ala
Descriptor: L-asparaginase, SODIUM ION, SULFATE ION, ...
Authors:Li, W.Z, Yogesha, S.D, Liu, J, Zhang, Y.
Deposit date:2011-08-26
Release date:2012-10-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Uncoupling Intramolecular Processing and Substrate Hydrolysis in the N-Terminal Nucleophile Hydrolase hASRGL1 by Circular Permutation.
Acs Chem.Biol., 7, 2012
4ET0
DownloadVisualize
BU of 4et0 by Molmil
Crystal structure of circularly permuted human asparaginase-like protein 1
Descriptor: L-asparaginase, SODIUM ION
Authors:Li, W.Z, Yogesha, S.D, Zhang, Y.
Deposit date:2012-04-23
Release date:2012-09-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Uncoupling Intramolecular Processing and Substrate Hydrolysis in the N-Terminal Nucleophile Hydrolase hASRGL1 by Circular Permutation.
Acs Chem.Biol., 7, 2012
6ABO
DownloadVisualize
BU of 6abo by Molmil
human XRCC4 and IFFO1 complex
Descriptor: DNA repair protein XRCC4, GLYCEROL, Intermediate filament family orphan 1, ...
Authors:Li, J, Liu, L, Liang, H, Liu, Y, Xu, D.
Deposit date:2018-07-23
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:The nucleoskeleton protein IFFO1 immobilizes broken DNA and suppresses chromosome translocation during tumorigenesis.
Nat.Cell Biol., 21, 2019
2N2Y
DownloadVisualize
BU of 2n2y by Molmil
Solution structure of the meiosis-expressed gene 1 (Meig1)
Descriptor: Meiosis-expressed gene 1 protein
Authors:Williams Jr, D.C, Walavalkar, N.M, Buchwald, W.A.
Deposit date:2015-05-16
Release date:2016-01-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Dissecting the structural basis of MEIG1 interaction with PACRG.
Sci Rep, 6, 2016
9BE7
DownloadVisualize
BU of 9be7 by Molmil
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP without Trp
Descriptor: Transcription attenuation protein MtrB
Authors:Yang, H, Stachowski, K, Foster, M.
Deposit date:2024-04-15
Release date:2025-01-22
Method:ELECTRON MICROSCOPY (4.24 Å)
Cite:Structural basis of nearest-neighbor cooperativity in the ring-shaped gene regulatory protein TRAP from protein engineering and cryo-EM.
Proc.Natl.Acad.Sci.USA, 122, 2025
9BE8
DownloadVisualize
BU of 9be8 by Molmil
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant T49A/T52A dTRAP with Trp
Descriptor: TRYPTOPHAN, Transcription attenuation protein MtrB
Authors:Yang, H, Stachowski, K, Foster, M.
Deposit date:2024-04-15
Release date:2025-01-22
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (4.14 Å)
Cite:Structural basis of nearest-neighbor cooperativity in the ring-shaped gene regulatory protein TRAP from protein engineering and cryo-EM.
Proc.Natl.Acad.Sci.USA, 122, 2025
9BDS
DownloadVisualize
BU of 9bds by Molmil
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP with Trp
Descriptor: TRYPTOPHAN, Transcription attenuation protein MtrB
Authors:Yang, H, Stachowski, K, Foster, M.
Deposit date:2024-04-12
Release date:2025-01-22
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis of nearest-neighbor cooperativity in the ring-shaped gene regulatory protein TRAP from protein engineering and cryo-EM.
Proc.Natl.Acad.Sci.USA, 122, 2025
6KMS
DownloadVisualize
BU of 6kms by Molmil
Crystal structure of human N6amt1-Trm112 in complex with SAM (space group I422)
Descriptor: Methyltransferase N6AMT1, Multifunctional methyltransferase subunit TRM112-like protein, S-ADENOSYLMETHIONINE
Authors:Li, W.J, Shi, Y, Zhang, T.L, Ye, J, Ding, J.P.
Deposit date:2019-08-01
Release date:2019-09-18
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insight into human N6amt1-Trm112 complex functioning as a protein methyltransferase.
Cell Discov, 5, 2019
6KMR
DownloadVisualize
BU of 6kmr by Molmil
Crystal structure of human N6amt1-Trm112 in complex with SAM (space group P6122)
Descriptor: 1,2-ETHANEDIOL, Methyltransferase N6AMT1, Multifunctional methyltransferase subunit TRM112-like protein, ...
Authors:Li, W.J, Shi, Y, Zhang, T.L, Ye, J, Ding, J.P.
Deposit date:2019-08-01
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insight into human N6amt1-Trm112 complex functioning as a protein methyltransferase.
Cell Discov, 5, 2019
8Z91
DownloadVisualize
BU of 8z91 by Molmil
Soil metagenomic-derived esterase
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, Esterase, ...
Authors:Li, W.Q, Sun, S.W.
Deposit date:2024-04-22
Release date:2024-12-25
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Discovery and characterization of a novel bottle-grade PET depolymerase with a BON domain-containing protein
To Be Published
6JYM
DownloadVisualize
BU of 6jym by Molmil
Crystal structure of Prolyl Endopeptidase from Haliotis discus hannai
Descriptor: Prolyl endopeptidase
Authors:Li, W, Cao, M, Jin, T.
Deposit date:2019-04-26
Release date:2020-04-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Characterization and crystal structure of prolyl endopeptidase from abalone (Haliotis discus hannai).
FOOD CHEM, 333, 2020
8JHO
DownloadVisualize
BU of 8jho by Molmil
Cryo-EM structure of the histone deacetylase complex Rpd3S in complex with di-nucleosome
Descriptor: Chromatin modification-related protein EAF3, Di-nucleosome template foward, Di-nucleosome template reverse, ...
Authors:Wang, H.
Deposit date:2023-05-25
Release date:2023-09-27
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (7.6 Å)
Cite:Structure of histone deacetylase complex Rpd3S bound to nucleosome.
Nat.Struct.Mol.Biol., 30, 2023
8XPK
DownloadVisualize
BU of 8xpk by Molmil
Marine bacterial laminarinase PtLam mutant E154A in complex with laminatriose
Descriptor: CALCIUM ION, Laminarinase, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-alpha-D-glucopyranose
Authors:Yang, J.
Deposit date:2024-01-03
Release date:2024-08-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular insights into the hydrolysis and transglycosylation of a deep-sea Planctomycetota -derived GH16 family laminarinase.
Appl.Environ.Microbiol., 90, 2024
8XPH
DownloadVisualize
BU of 8xph by Molmil
Marine Planctomycetes laminarinase PtLam
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Laminarinase PtLam
Authors:Yang, J.
Deposit date:2024-01-03
Release date:2024-08-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular insights into the hydrolysis and transglycosylation of a deep-sea Planctomycetota -derived GH16 family laminarinase.
Appl.Environ.Microbiol., 90, 2024
5D9Y
DownloadVisualize
BU of 5d9y by Molmil
Crystal structure of TET2-5fC complex
Descriptor: DNA (5'-D(*AP*CP*TP*GP*TP*(5FC)P*GP*AP*AP*GP*CP*T)-3'), DNA (5'-D(*AP*GP*CP*TP*TP*CP*GP*AP*CP*AP*GP*T)-3'), FE (III) ION, ...
Authors:Hu, L, Cheng, J, Rao, Q, Li, Z, Li, J, Xu, Y.
Deposit date:2015-08-19
Release date:2015-11-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.971 Å)
Cite:Structural insight into substrate preference for TET-mediated oxidation.
Nature, 527, 2015

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon