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6CKL
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BU of 6ckl by Molmil
N. meningitidis CMP-sialic acid synthetase in the presence of CMP and Neu5Ac2en
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, CHLORIDE ION, CITRATE ANION, ...
Authors:Matthews, M.M, Fisher, A.J, Chen, X.
Deposit date:2018-02-28
Release date:2019-03-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.684 Å)
Cite:Catalytic Cycle ofNeisseria meningitidisCMP-Sialic Acid Synthetase Illustrated by High-Resolution Protein Crystallography.
Biochemistry, 2019
8K4S
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BU of 8k4s by Molmil
CryoEM structure of Gq coupled MRGPRX4 with agonist DCA-3P
Descriptor: (4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},12~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-12-oxidanyl-3-phosphonooxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid, Gs-mini-Gq chimera, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Yang, J, Fan, J.P, Lei, X.G.
Deposit date:2023-07-20
Release date:2024-11-06
Last modified:2024-12-25
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure-guided discovery of bile acid derivatives for treating liver diseases without causing itch.
Cell, 187, 2024
6J7B
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BU of 6j7b by Molmil
Crystal structure of VASH1-SVBP in complex with epoY
Descriptor: N-[(3R)-4-ethoxy-3-hydroxy-4-oxobutanoyl]-L-tyrosine, Small vasohibin-binding protein, Tubulinyl-Tyr carboxypeptidase 1
Authors:Wang, N, Bao, H, Huang, H, Wu, B.
Deposit date:2019-01-17
Release date:2019-06-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.618 Å)
Cite:Molecular basis of vasohibins-mediated detyrosination and its impact on spindle function and mitosis.
Cell Res., 29, 2019
6CKM
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BU of 6ckm by Molmil
N. meningitidis CMP-sialic acid synthetase in the presence of CMP-sialic acid and Ca2+
Descriptor: CALCIUM ION, CYTIDINE-5'-MONOPHOSPHATE-5-N-ACETYLNEURAMINIC ACID, GLYCEROL, ...
Authors:Matthews, M.M, Fisher, A.J, Chen, X.
Deposit date:2018-02-28
Release date:2019-03-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.543 Å)
Cite:Catalytic Cycle ofNeisseria meningitidisCMP-Sialic Acid Synthetase Illustrated by High-Resolution Protein Crystallography.
Biochemistry, 2019
7XPT
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BU of 7xpt by Molmil
Crystal structrue of MtdL:GDP:Mn soaked with GDP-Glc
Descriptor: GDP-ALPHA-D-GLUCOSE, MANGANESE (II) ION, Transglycosylse
Authors:Li, F.D, He, C.
Deposit date:2022-05-05
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of the NDP-pyranose mutase belonging to glycosyltransferase family 75 reveal residues important for Mn 2+ coordination and substrate binding.
J.Biol.Chem., 299, 2023
7XPR
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BU of 7xpr by Molmil
Crystal structrue of SeMet-MtdL:GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Transglycosylse
Authors:Li, F.D, He, C.
Deposit date:2022-05-05
Release date:2023-03-29
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of the NDP-pyranose mutase belonging to glycosyltransferase family 75 reveal residues important for Mn 2+ coordination and substrate binding.
J.Biol.Chem., 299, 2023
7XPV
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BU of 7xpv by Molmil
crysteal structure of MtdL-S228A-His soaked with GDP-Fucf and Mn
Descriptor: MANGANESE (II) ION, Transglycosylse, [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{S},3~{S},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[(1~{S})-1-oxidanylethyl]oxolan-2-yl] hydrogen phosphate
Authors:Li, F.D, He, C.
Deposit date:2022-05-05
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of the NDP-pyranose mutase belonging to glycosyltransferase family 75 reveal residues important for Mn 2+ coordination and substrate binding.
J.Biol.Chem., 299, 2023
7XPU
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BU of 7xpu by Molmil
crystal structure of MtdL-S228A-His soaked GDP-Fucp and Mn
Descriptor: GLYCEROL, GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE, MANGANESE (II) ION, ...
Authors:Li, F.D, He, C.
Deposit date:2022-05-05
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of the NDP-pyranose mutase belonging to glycosyltransferase family 75 reveal residues important for Mn 2+ coordination and substrate binding.
J.Biol.Chem., 299, 2023
7XPS
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BU of 7xps by Molmil
Crystal structrue of MtdL:GDP:Mn
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, Transglycosylse
Authors:Li, F.D, He, C.
Deposit date:2022-05-05
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of the NDP-pyranose mutase belonging to glycosyltransferase family 75 reveal residues important for Mn 2+ coordination and substrate binding.
J.Biol.Chem., 299, 2023
8KEX
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BU of 8kex by Molmil
CryoEM structure of Gq coupled MRGPRX4 with agonist DCA-3P, local
Descriptor: (4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},12~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-12-oxidanyl-3-phosphonooxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid, Soluble cytochrome b562,Mas-related G-protein coupled receptor member X4,Green fluorescent protein
Authors:Yang, J, Fan, J.P, Lei, X.G.
Deposit date:2023-08-14
Release date:2024-11-06
Last modified:2024-12-25
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure-guided discovery of bile acid derivatives for treating liver diseases without causing itch.
Cell, 187, 2024
6MZT
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BU of 6mzt by Molmil
Solution structure of alpha-KTx-6.21 (UroTx) from Urodacus yaschenkoi
Descriptor: Potassium channel toxin alpha-KTx 6.21
Authors:Chin, Y.K.-Y, Luna-Ramirez, K, Anangi, R, King, G.F.
Deposit date:2018-11-05
Release date:2020-03-11
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Structural basis of the potency and selectivity of Urotoxin, a potent Kv1 blocker from scorpion venom.
Biochem. Pharmacol., 174, 2020
6CKK
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BU of 6ckk by Molmil
N. meningitidis CMP-sialic acid synthetase in the presence of CTP and Ca2+
Descriptor: CALCIUM ION, CYTIDINE-5'-TRIPHOSPHATE, N-acylneuraminate cytidylyltransferase
Authors:Matthews, M.M, Fisher, A.J, Chen, X.
Deposit date:2018-02-28
Release date:2019-03-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Catalytic Cycle ofNeisseria meningitidisCMP-Sialic Acid Synthetase Illustrated by High-Resolution Protein Crystallography.
Biochemistry, 2019
6EFC
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BU of 6efc by Molmil
Hsa Siglec + Unique domains (unliganded)
Descriptor: CALCIUM ION, SODIUM ION, Streptococcal hemagglutinin
Authors:Iverson, T.M.
Deposit date:2018-08-16
Release date:2020-02-19
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Origins of glycan selectivity in streptococcal Siglec-like adhesins suggest mechanisms of receptor adaptation.
Nat Commun, 13, 2022
6EFI
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BU of 6efi by Molmil
SK678 binding region (Siglec + Unique)
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, COBALT (II) ION, ...
Authors:Iverson, T.M.
Deposit date:2018-08-16
Release date:2020-02-19
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.715 Å)
Cite:Origins of glycan selectivity in streptococcal Siglec-like adhesins suggest mechanisms of receptor adaptation.
Nat Commun, 13, 2022
6DWO
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BU of 6dwo by Molmil
Crystal structure of alpha-1-2-mannosidase from Enterococcus faecalis V583
Descriptor: ACETATE ION, Alpha-1,2-mannosidase, CALCIUM ION, ...
Authors:Fisher, A.J, Li, Y.
Deposit date:2018-06-26
Release date:2019-10-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Enterococcus faecalis alpha 1-2-mannosidase (EfMan-I): an efficient catalyst for glycoprotein N-glycan modification.
Febs Lett., 594, 2020
6ER3
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BU of 6er3 by Molmil
Ruminococcus gnavus IT-sialidase CBM40 bound to alpha2,3 sialyllactose
Descriptor: BNR/Asp-box repeat protein, GLYCEROL, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose
Authors:Owen, C.D, Tailford, L.E, Taylor, G.L, Juge, N.
Deposit date:2017-10-16
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Unravelling the specificity and mechanism of sialic acid recognition by the gut symbiont Ruminococcus gnavus.
Nat Commun, 8, 2017
6EF7
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BU of 6ef7 by Molmil
GspB Siglec domain
Descriptor: CALCIUM ION, Platelet binding protein GspB
Authors:Iverson, T.M.
Deposit date:2018-08-16
Release date:2020-02-19
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Origins of glycan selectivity in streptococcal Siglec-like adhesins suggest mechanisms of receptor adaptation.
Nat Commun, 13, 2022
6EFB
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BU of 6efb by Molmil
GspB Siglec domain
Descriptor: CALCIUM ION, GLYCEROL, SK150 siglec + Unique, ...
Authors:Iverson, T.M.
Deposit date:2018-08-16
Release date:2020-02-19
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Origins of glycan selectivity in streptococcal Siglec-like adhesins suggest mechanisms of receptor adaptation.
Nat Commun, 13, 2022
6EFA
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BU of 6efa by Molmil
GspB Siglec + Unique domains
Descriptor: CALCIUM ION, Platelet binding protein GspB
Authors:Iverson, T.M.
Deposit date:2018-08-16
Release date:2020-02-19
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Origins of glycan selectivity in streptococcal Siglec-like adhesins suggest mechanisms of receptor adaptation.
Nat Commun, 13, 2022
6EF9
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BU of 6ef9 by Molmil
GspB Siglec domain
Descriptor: FORMIC ACID, Platelet binding protein GspB - Siglec domain, SODIUM ION
Authors:Iverson, T.M.
Deposit date:2018-08-16
Release date:2020-02-19
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Origins of glycan selectivity in streptococcal Siglec-like adhesins suggest mechanisms of receptor adaptation.
Nat Commun, 13, 2022
8WZ4
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BU of 8wz4 by Molmil
Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 strain: A2) in complex with nAb 5B11 (localized refinement)
Descriptor: 5B11 Fab Heavy Chain, 5B11 Fab Light Chain, RSV Fusion glycoprotein
Authors:Liu, L, Sun, H, Sun, Y, Zheng, Q, Li, S, Zheng, Z, Xia, N.
Deposit date:2023-11-01
Release date:2024-11-06
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:A potent broad-spectrum neutralizing antibody targeting a conserved region of the prefusion RSV F protein.
Nat Commun, 15, 2024
8WZ3
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BU of 8wz3 by Molmil
Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 strain: A2) in complex with nAb 5B11
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5B11 Fab Heavy Chain, 5B11 Fab Light Chain, ...
Authors:Liu, L, Sun, H, Sun, Y, Zheng, Q, Li, S, Zheng, Z, Xia, N.
Deposit date:2023-11-01
Release date:2024-11-13
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:A potent broad-spectrum neutralizing antibody targeting a conserved region of the prefusion RSV F protein.
Nat Commun, 15, 2024
8WZ5
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BU of 8wz5 by Molmil
Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 sc9-10 strain: B18537) in complex with humanized nAb 5B11
Descriptor: 5B11 Fab Heavy Chain, 5B11 Fab Light Chain, RSV Fusion glycoprotein
Authors:Liu, L, Sun, H, Sun, Y, Zheng, Q, Li, S, Zheng, Z, Xia, N.
Deposit date:2023-11-01
Release date:2024-11-13
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (3.51 Å)
Cite:A potent broad-spectrum neutralizing antibody targeting a conserved region of the prefusion RSV F protein.
Nat Commun, 15, 2024
8WZE
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BU of 8wze by Molmil
Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 sc9-10 strain: B18537) in complex with humanized nAb 5B11 (localized refinement)
Descriptor: 5B11 Fab Heavy Chain, 5B11 Fab Light Chain, RSV pre-fusion glycoprotein
Authors:Liu, L, Sun, H, Sun, Y, Zheng, Q, Li, S, Zheng, Z, Xia, N.
Deposit date:2023-11-02
Release date:2024-11-13
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:A potent broad-spectrum neutralizing antibody targeting a conserved region of the prefusion RSV F protein.
Nat Commun, 15, 2024
9BT9
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BU of 9bt9 by Molmil
Cryo-EM Structure of HKU1 spike D1 Domain (Active state, locally refined)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Jin, M, Rini, J.M.
Deposit date:2024-05-14
Release date:2025-05-14
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (2.11 Å)
Cite:Human coronavirus HKU1 spike structures reveal the basis for sialoglycan specificity and carbohydrate-promoted conformational changes.
Nat Commun, 16, 2025

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PDB entries from 2025-07-09

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