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6G3B
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BU of 6g3b by Molmil
AvaII restriction endonuclease in complex with an RNA/DNA hybrid
Descriptor: DNA (5'-D(*CP*CP*AP*TP*GP*GP*TP*CP*CP*TP*A)-3'), RNA (5'-R(P*GP*UP*AP*GP*GP*AP*CP*CP*AP*UP*G)-3'), Type II site-specific deoxyribonuclease
Authors:Kisiala, M, Kowalska, M, Czapinska, H, Bochtler, M.
Deposit date:2018-03-24
Release date:2019-04-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Restriction endonucleases that cleave RNA/DNA heteroduplexes bind dsDNA in A-like conformation
Nucleic Acids Res., 2020
2RMX
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BU of 2rmx by Molmil
Solution structure of the SHP-1 C-terminal SH2 domain complexed with a tyrosine-phosphorylated peptide from NKG2A
Descriptor: NKG2-A/NKG2-B type II integral membrane protein, Tyrosine-protein phosphatase non-receptor type 6
Authors:Kasai, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-11-30
Release date:2008-12-02
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:Structural basis for the recognition of the two NKG2A immunoreceptor tyrosine-based inhibitory motifs (ITIMs) by the C-terminal SH2 domain of protein tyrosine phosphatase SHP-1
To be Published
8IVR
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BU of 8ivr by Molmil
Methyl and Fluorine Effects in Novel Orally Bioavailable Keap1/Nrf2 PPI Inhibitor for Treatment of Chronic Kidney Disease
Descriptor: (2R,3S)-2-methyl-3-(4-methylphenyl)-3-[2-(5,6,7,8-tetrahydronaphthalen-2-yl)ethanoylamino]propanoic acid, Kelch-like ECH-associated protein 1, SULFATE ION
Authors:Nomura, A, Yamaguchi, K, Adachi, T.
Deposit date:2023-03-28
Release date:2023-06-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Methyl and Fluorine Effects in Novel Orally Bioavailable Keap1-Nrf2 PPI Inhibitor.
Acs Med.Chem.Lett., 14, 2023
8IXS
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BU of 8ixs by Molmil
Methyl and Fluorine Effects in Novel Orally Bioavailable Keap1/Nrf2 PPI Inhibitor for Treatment of Chronic Kidney Disease
Descriptor: (2R,3S)-3-[[(2S)-2-fluoranyl-2-(5,6,7,8-tetrahydronaphthalen-2-yl)ethanoyl]amino]-2-methyl-3-(4-methylphenyl)propanoic acid, Kelch-like ECH-associated protein 1, SULFATE ION
Authors:Nomura, A, Yamaguchi, K, Adachi, T.
Deposit date:2023-04-03
Release date:2023-06-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Methyl and Fluorine Effects in Novel Orally Bioavailable Keap1-Nrf2 PPI Inhibitor.
Acs Med.Chem.Lett., 14, 2023
2COM
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BU of 2com by Molmil
The solution structure of the SWIRM domain of human LSD1
Descriptor: Lysine-specific histone demethylase 1
Authors:Tochio, N, Umehara, T, Koshiba, S, Inoue, M, Tanaka, A, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-18
Release date:2005-11-18
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the SWIRM domain of human histone demethylase LSD1
Structure, 14, 2006
1DHY
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BU of 1dhy by Molmil
KKS102 BPHC ENZYME
Descriptor: 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, FE (III) ION
Authors:Senda, T, Sugiyama, K, Narita, H, Mitsui, Y.
Deposit date:1995-07-07
Release date:1995-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102.
J.Mol.Biol., 255, 1996
4YH8
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BU of 4yh8 by Molmil
Structure of yeast U2AF complex
Descriptor: Splicing factor U2AF 23 kDa subunit, Splicing factor U2AF 59 kDa subunit, ZINC ION
Authors:Yoshida, H, Park, S.Y, Urano, T, Obayashi, E.
Deposit date:2015-02-27
Release date:2015-08-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A novel 3' splice site recognition by the two zinc fingers in the U2AF small subunit.
Genes Dev., 29, 2015
2RVM
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BU of 2rvm by Molmil
Solution structure of the chromodomain of HP1alpha with the phosphorylated N-terminal tail
Descriptor: Chromobox protein homolog 5
Authors:Kawaguchi, A, Nishimura, Y.
Deposit date:2015-12-18
Release date:2016-03-16
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016
2RVN
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BU of 2rvn by Molmil
Solution structure of the chromodomain of HP1a with the phosphorylated N-terminal tail complexed with H3K9me3 peptide
Descriptor: 18-mer peptide of Histone H3, Chromobox protein homolog 5
Authors:Kawaguchi, A, Nishimura, Y.
Deposit date:2015-12-18
Release date:2016-03-16
Last modified:2025-03-26
Method:SOLUTION NMR
Cite:Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016
2RVL
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BU of 2rvl by Molmil
Solution structure of the chromodomain of HP1alpha with the N-terminal tail
Descriptor: Chromobox protein homolog 5
Authors:Kawaguchi, A, Nishimura, Y.
Deposit date:2015-12-18
Release date:2016-03-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016
3WKM
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BU of 3wkm by Molmil
The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus in complex with the Fab fragment
Descriptor: MOUSE IGG1-KAPPA FAB (HEAVY CHAIN), MOUSE IGG1-KAPPA FAB (LIGHT CHAIN), Putative zinc metalloprotease aq_1964
Authors:Nogi, T, Tabata, S, Tamura-kawakami, K, Takagi, J.
Deposit date:2013-10-28
Release date:2013-12-18
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Structure-Based Model of Substrate Discrimination by a Noncanonical PDZ Tandem in the Intramembrane-Cleaving Protease RseP
Structure, 22, 2013
5YFI
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BU of 5yfi by Molmil
Crystal structure of the anti-human prostaglandin E receptor EP4 antibody Fab fragment
Descriptor: Heavy chain of Fab fragment, Light chain of Fab fragment, ZINC ION
Authors:Toyoda, Y, Morimoto, K, Suno, R, Horita, S, Iwata, S, Kobayashi, T.
Deposit date:2017-09-21
Release date:2018-12-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.848 Å)
Cite:Ligand binding to human prostaglandin E receptor EP4at the lipid-bilayer interface.
Nat. Chem. Biol., 15, 2019
5YHL
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BU of 5yhl by Molmil
Crystal structure of the human prostaglandin E receptor EP4 in complex with Fab and an antagonist Br-derivative
Descriptor: 4-[2-[[(2R)-2-(4-bromanylnaphthalen-1-yl)propanoyl]amino]-4-cyano-phenyl]butanoic acid, Heavy chain of Fab fragment, Light chain of Fab fragment, ...
Authors:Toyoda, Y, Morimoto, K, Suno, R, Horita, S, Iwata, S, Kobayashi, T.
Deposit date:2017-09-28
Release date:2018-12-05
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Ligand binding to human prostaglandin E receptor EP4at the lipid-bilayer interface.
Nat. Chem. Biol., 15, 2019
5YWY
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BU of 5ywy by Molmil
Crystal structure of the human prostaglandin E receptor EP4 in complex with Fab and ONO-AE3-208
Descriptor: 4-[4-cyano-2-[[(2R)-2-(4-fluoranylnaphthalen-1-yl)propanoyl]amino]phenyl]butanoic acid, Heavy chain of Fab fragment, Light chain of Fab fragment, ...
Authors:Toyoda, Y, Morimoto, K, Suno, R, Horita, S, Iwata, S, Kobayashi, T.
Deposit date:2017-11-30
Release date:2018-12-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Ligand binding to human prostaglandin E receptor EP4at the lipid-bilayer interface.
Nat. Chem. Biol., 15, 2019
5Y25
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BU of 5y25 by Molmil
EGFR kinase domain mutant (T790M/L858R) with covalent ligand NS-062
Descriptor: (2R)-N-[4-[(3-chloranyl-4-fluoranyl-phenyl)amino]-7-(3-morpholin-4-ylpropoxy)quinazolin-6-yl]-1-(2-fluoranylethanoyl)pyrrolidine-2-carboxamide, Epidermal growth factor receptor
Authors:Shiroishi, M, Abe, Y, Caaveiro, J.M.M, Sakamoto, S, Morimoto, S, Fuchida, H, Shindo, N, Ojida, A.
Deposit date:2017-07-24
Release date:2018-07-25
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.102 Å)
Cite:Selective and reversible modification of kinase cysteines with chlorofluoroacetamides.
Nat.Chem.Biol., 15, 2019
4XZG
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BU of 4xzg by Molmil
Crystal structure of HIRAN domain of human HLTF
Descriptor: Helicase-like transcription factor
Authors:Ikegaya, Y, Hara, K, Hashimoto, H.
Deposit date:2015-02-04
Release date:2015-04-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of a Novel DNA-binding Domain of Helicase-like Transcription Factor (HLTF) and Its Functional Implication in DNA Damage Tolerance
J.Biol.Chem., 290, 2015
4XZF
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BU of 4xzf by Molmil
Crystal structure of HIRAN domain of human HLTF in complex with DNA
Descriptor: (DA)(DC)(DC)(DG)(DC)(DC)(DG)(DG)(DG)(DT)(DG)(DC)(DC), Helicase-like transcription factor
Authors:Hishiki, A, Hashimoto, H.
Deposit date:2015-02-04
Release date:2015-04-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Structure of a Novel DNA-binding Domain of Helicase-like Transcription Factor (HLTF) and Its Functional Implication in DNA Damage Tolerance
J.Biol.Chem., 290, 2015
2LC2
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BU of 2lc2 by Molmil
Solution structure of the RXLR effector P. capsici AVR3a4
Descriptor: AVR3a4
Authors:Li, H, Koshiba, S, Yaeno, T, Sato, M, Watanabe, S, Harada, T, Shirasu, K, Kigawa, T.
Deposit date:2011-04-12
Release date:2011-08-03
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A PIP-binding interface in the oomycete RXLR effector AVR3A is required for its accumulation in host cells to modulate plant immunity
To be Published
5X2D
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BU of 5x2d by Molmil
Crystal structure of DLC like domain of CsTAL3 (83-177aa)
Descriptor: Tegumental protein 20.8 kDa
Authors:Jo, C.H, Hwang, K.Y.
Deposit date:2017-01-31
Release date:2017-08-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insights into a 20.8-kDa tegumental-allergen-like (TAL) protein from Clonorchis sinensis
Sci Rep, 7, 2017
5X2E
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BU of 5x2e by Molmil
Crystal structure of Calmodulin like domain of CsTAL3 (1-81aa)
Descriptor: CALCIUM ION, Tegumental protein 20.8 kDa
Authors:Jo, C.H, Hwang, K.Y.
Deposit date:2017-01-31
Release date:2017-08-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.299 Å)
Cite:Structural insights into a 20.8-kDa tegumental-allergen-like (TAL) protein from Clonorchis sinensis
Sci Rep, 7, 2017
1IQQ
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BU of 1iqq by Molmil
Crystal Structure of Japanese pear S3-RNase
Descriptor: S3-RNase, beta-D-xylopyranose-(1-2)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Matsuura, T, Sakai, H, Norioka, S.
Deposit date:2001-07-25
Release date:2001-11-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure at 1.5-A resolution of Pyrus pyrifolia pistil ribonuclease responsible for gametophytic self-incompatibility.
J.Biol.Chem., 276, 2001
6A88
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BU of 6a88 by Molmil
Crystal Structure of T. gondii prolyl tRNA synthetase with Febrifugine and ATP Analog
Descriptor: 3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Kumari, S, Mishra, S, Yogavel, M, Sharma, A.
Deposit date:2018-07-06
Release date:2019-10-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.596 Å)
Cite:Conformational heterogeneity in apo and drug-bound structures of Toxoplasma gondii prolyl-tRNA synthetase.
Acta Crystallogr.,Sect.F, 75, 2019
6AA0
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BU of 6aa0 by Molmil
Crystal Structure of Toxoplasma gondii Prolyl tRNA Synthetase (TgPRS) in Apo Form
Descriptor: GLYCEROL, Prolyl-tRNA synthetase (ProRS)
Authors:Mishra, S, Kumari, S, Sharma, A, Yogavel, M.
Deposit date:2018-07-16
Release date:2019-10-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Conformational heterogeneity in apo and drug-bound structures of Toxoplasma gondii prolyl-tRNA synthetase.
Acta Crystallogr.,Sect.F, 75, 2019
1DLF
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BU of 1dlf by Molmil
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 5.25
Descriptor: ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S), SULFATE ION
Authors:Nakasako, M, Takahashi, H, Shimada, I, Arata, Y.
Deposit date:1998-07-14
Release date:1999-07-26
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody.
J.Mol.Biol., 291, 1999
1BFN
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BU of 1bfn by Molmil
BETA-AMYLASE/BETA-CYCLODEXTRIN COMPLEX
Descriptor: BETA-AMYLASE, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), SULFATE ION
Authors:Adachi, M, Mikami, B, Katsube, T, Utsumi, S.
Deposit date:1998-05-22
Release date:1998-10-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of recombinant soybean beta-amylase complexed with beta-cyclodextrin.
J.Biol.Chem., 273, 1998

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