1G2U
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![BU of 1g2u by Molmil](/molmil-images/mine/1g2u) | THE STRUCTURE OF THE MUTANT, A172V, OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM THERMUS THERMOPHILUS HB8 : ITS THERMOSTABILITY AND STRUCTURE. | Descriptor: | 3-ISOPROPYLMALATE DEHYDROGENASE | Authors: | Qu, C, Akanuma, S, Tanaka, N, Moriyama, H, Oshima, T. | Deposit date: | 2000-10-21 | Release date: | 2000-11-01 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Design, X-ray crystallography, molecular modelling and thermal stability studies of mutant enzymes at site 172 of 3-isopropylmalate dehydrogenase from Thermus thermophilus. Acta Crystallogr.,Sect.D, 57, 2001
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5YJ0
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5YIZ
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1GC8
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![BU of 1gc8 by Molmil](/molmil-images/mine/1gc8) | THE CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS 3-ISOPROPYLMALATE DEHYDROGENASE MUTATED AT 172TH FROM ALA TO PHE | Descriptor: | 3-ISOPROPYLMALATE DEHYDROGENASE | Authors: | Qu, C, Akanuma, S, Tanaka, N, Moriyama, H, Oshima, T. | Deposit date: | 2000-07-27 | Release date: | 2000-09-27 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Design, X-ray crystallography, molecular modelling and thermal stability studies of mutant enzymes at site 172 of 3-isopropylmalate dehydrogenase from Thermus thermophilus. Acta Crystallogr.,Sect.D, 57, 2001
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1GC9
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![BU of 1gc9 by Molmil](/molmil-images/mine/1gc9) | THE CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS 3-ISOPROPYLMALATE DEHYDROGENASE MUTATED AT 172TH FROM ALA TO GLY | Descriptor: | 3-ISOPROPYLMALATE DEHYDROGENASE | Authors: | Qu, C, Akanuma, S, Tanaka, N, Moriyama, H, Oshima, T. | Deposit date: | 2000-07-28 | Release date: | 2000-09-27 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Design, X-ray crystallography, molecular modelling and thermal stability studies of mutant enzymes at site 172 of 3-isopropylmalate dehydrogenase from Thermus thermophilus. Acta Crystallogr.,Sect.D, 57, 2001
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5YGX
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![BU of 5ygx by Molmil](/molmil-images/mine/5ygx) | Structure of BACE1 in complex with N-(3-((4R,5R,6S)-2-amino-6-(1,1-difluoroethyl)-5-fluoro-4-methyl-5,6-dihydro-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-(fluoromethoxy)pyrazine-2-carboxamide | Descriptor: | Beta-secretase 1, DIMETHYL SULFOXIDE, GLYCEROL, ... | Authors: | Nakahara, K, Fuchino, K, Komano, K, Asada, N, Tadano, G, Hasegawa, T, Yamamoto, T, Sako, Y, Ogawa, M, Unemura, C, Hosono, M, Sakaguchi, G, Ando, S, Ohnishi, S, Kido, Y, Fukushima, T, Dhuyvetter, D, Borghys, H, Gijsen, H, Yamano, Y, Iso, Y, Kusakabe, K. | Deposit date: | 2017-09-27 | Release date: | 2018-08-08 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Discovery of Potent and Centrally Active 6-Substituted 5-Fluoro-1,3-dihydro-oxazine beta-Secretase (BACE1) Inhibitors via Active Conformation Stabilization J. Med. Chem., 61, 2018
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5YJ1
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![BU of 5yj1 by Molmil](/molmil-images/mine/5yj1) | Mouse Cereblon thalidomide binding domain complexed with R-form thalidomide | Descriptor: | 2-[(3~{R})-2,6-bis(oxidanylidene)piperidin-3-yl]isoindole-1,3-dione, Protein cereblon, SULFATE ION, ... | Authors: | Mori, T, Hakoshima, T. | Deposit date: | 2017-10-06 | Release date: | 2018-02-07 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural basis of thalidomide enantiomer binding to cereblon Sci Rep, 8, 2018
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6JT3
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![BU of 6jt3 by Molmil](/molmil-images/mine/6jt3) | Crystal Structure of BACE1 in complex with N-{3-[(4R,5R,6R)-2-amino-5-fluoro-4,6-dimethyl-5,6-dihydro-4H-1,3-thiazin-4-yl]-4-fluorophenyl}-5-(fluoromethoxy)pyrazine-2-carboxamide | Descriptor: | Beta-secretase 1, DIMETHYL SULFOXIDE, GLYCEROL, ... | Authors: | Tadano, G, Komano, K, Yoshida, S, Suzuki, S, Nakahara, K, Fuchino, K, Fujimoto, K, Matsuoka, E, Yamamoto, T, Asada, N, Ito, H, Sakaguchi, G, Kanegawa, N, Kido, Y, Ando, S, Fukushima, T, Teisman, A, Urmaliya, V, Dhuyvetter, D, Borghys, H, Bergh, A.V.D, Austin, N, Gijsen, H.J.M, Yamano, Y, Iso, Y, Kusakabe, K.I. | Deposit date: | 2019-04-08 | Release date: | 2019-10-30 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Discovery of an Extremely Potent Thiazine-Based beta-Secretase Inhibitor with Reduced Cardiovascular and Liver Toxicity at a Low Projected Human Dose. J.Med.Chem., 62, 2019
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6K9Z
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![BU of 6k9z by Molmil](/molmil-images/mine/6k9z) | STRUCTURE OF URIDYLYLTRANSFERASE MUTANT | Descriptor: | ACETATE ION, FE (III) ION, Galactose-1-phosphate uridylyltransferase, ... | Authors: | Sakuraba, H, Ohshida, T, Yoneda, K, Ohshima, T. | Deposit date: | 2019-06-19 | Release date: | 2019-12-18 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.78 Å) | Cite: | Unique active site formation in a novel galactose 1-phosphate uridylyltransferase from the hyperthermophilic archaeon Pyrobaculum aerophilum. Proteins, 88, 2020
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6K3C
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![BU of 6k3c by Molmil](/molmil-images/mine/6k3c) | Crystal structure of class I PHA synthase (PhaC) mutant from Chromobacterium sp. USM2 bound to Coenzyme A. | Descriptor: | COENZYME A, Intracellular polyhydroxyalkanoate synthase | Authors: | Chek, M.F, Kim, S.Y, Mori, T, Hakoshima, T. | Deposit date: | 2019-05-17 | Release date: | 2020-04-29 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.074 Å) | Cite: | Asymmetric Open-Closed Dimer Mechanism of Polyhydroxyalkanoate Synthase PhaC. Iscience, 23, 2020
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6K5Z
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![BU of 6k5z by Molmil](/molmil-images/mine/6k5z) | Structure of uridylyltransferase | Descriptor: | FE (III) ION, Galactose-1-phosphate uridylyltransferase, PHOSPHATE ION, ... | Authors: | Sakuraba, H, Ohshida, T, Yoneda, K, Ohshima, T. | Deposit date: | 2019-05-31 | Release date: | 2019-12-18 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.33 Å) | Cite: | Unique active site formation in a novel galactose 1-phosphate uridylyltransferase from the hyperthermophilic archaeon Pyrobaculum aerophilum. Proteins, 88, 2020
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7DFP
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![BU of 7dfp by Molmil](/molmil-images/mine/7dfp) | Human dopamine D2 receptor in complex with spiperone | Descriptor: | 8-[4-(4-fluorophenyl)-4-oxidanylidene-butyl]-1-phenyl-1,3,8-triazaspiro[4.5]decan-4-one, D(2) dopamine receptor,Soluble cytochrome b562, FabH, ... | Authors: | Im, D, Shimamura, T, Iwata, S. | Deposit date: | 2020-11-09 | Release date: | 2020-12-30 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Structure of the dopamine D 2 receptor in complex with the antipsychotic drug spiperone. Nat Commun, 11, 2020
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1ISN
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![BU of 1isn by Molmil](/molmil-images/mine/1isn) | Crystal structure of merlin FERM domain | Descriptor: | merlin | Authors: | Shimizu, T, Seto, A, Maita, N, Hamada, K, Tsukita, S, Tsukita, S, Hakoshima, T. | Deposit date: | 2001-12-13 | Release date: | 2002-04-03 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Structural basis for neurofibromatosis type 2. Crystal structure of the merlin FERM domain. J.Biol.Chem., 277, 2002
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1IRU
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![BU of 1iru by Molmil](/molmil-images/mine/1iru) | Crystal Structure of the mammalian 20S proteasome at 2.75 A resolution | Descriptor: | 20S proteasome, MAGNESIUM ION | Authors: | Unno, M, Mizushima, T, Morimoto, Y, Tomisugi, Y, Tanaka, K, Yasuoka, N, Tsukihara, T. | Deposit date: | 2001-10-24 | Release date: | 2002-05-22 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.75 Å) | Cite: | The structure of the mammalian 20S proteasome at 2.75 A resolution. Structure, 10, 2002
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1UIX
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![BU of 1uix by Molmil](/molmil-images/mine/1uix) | Coiled-coil structure of the RhoA-binding domain in Rho-kinase | Descriptor: | Rho-associated kinase | Authors: | Shimizu, T, Ihara, K, Maesaki, R, Amano, M, Kaibuchi, K, Hakoshima, T. | Deposit date: | 2003-07-23 | Release date: | 2003-10-21 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Parallel coiled-coil association of the RhoA-binding domain in Rho-kinase J.Biol.Chem., 278, 2003
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1RL2
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1L2L
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6JXN
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![BU of 6jxn by Molmil](/molmil-images/mine/6jxn) | Crystal Structure of Indigo reductase from Bacillus smithii type strain DSM 4216 | Descriptor: | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, FLAVIN MONONUCLEOTIDE, ... | Authors: | Yoneda, K, Sakuraba, H, Ohshima, T. | Deposit date: | 2019-04-24 | Release date: | 2020-04-01 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.97 Å) | Cite: | Structural and biochemical characterization of an extremely thermostable FMN-dependent NADH-indigo reductase from Bacillus smithii. Int.J.Biol.Macromol., 164, 2020
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6JXS
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![BU of 6jxs by Molmil](/molmil-images/mine/6jxs) | Crystal Structure of Indigo reductase (Y151F) from Bacillus smithii type strain DSM 4216 | Descriptor: | 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, FLAVIN MONONUCLEOTIDE, FMN-dependent NADH-azoreductase | Authors: | Yoneda, K, Sakuraba, H, Ohshima, T. | Deposit date: | 2019-04-24 | Release date: | 2020-04-01 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structural and biochemical characterization of an extremely thermostable FMN-dependent NADH-indigo reductase from Bacillus smithii. Int.J.Biol.Macromol., 164, 2020
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4XB2
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![BU of 4xb2 by Molmil](/molmil-images/mine/4xb2) | Hyperthermophilic archaeal homoserine dehydrogenase mutant in complex with NADPH | Descriptor: | 319aa long hypothetical homoserine dehydrogenase, L-HOMOSERINE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | Authors: | Sakuraba, H, Inoue, S, Yoneda, K, Ohshima, T. | Deposit date: | 2014-12-16 | Release date: | 2015-07-15 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.43 Å) | Cite: | Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases. Sci Rep, 5, 2015
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4XB1
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![BU of 4xb1 by Molmil](/molmil-images/mine/4xb1) | Hyperthermophilic archaeal homoserine dehydrogenase in complex with NADPH | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 319aa long hypothetical homoserine dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | Authors: | Sakuraba, H, Inoue, S, Yoneda, K, Ohshima, T. | Deposit date: | 2014-12-16 | Release date: | 2015-07-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases. Sci Rep, 5, 2015
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1WPW
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![BU of 1wpw by Molmil](/molmil-images/mine/1wpw) | Crystal Structure of IPMDH from Sulfolobus tokodaii | Descriptor: | 3-isopropylmalate dehydrogenase, MAGNESIUM ION | Authors: | Hirose, R, Sakurai, M, Suzuki, T, Moriyama, H, Sato, T, Yamagishi, A, Oshima, T, Tanaka, N. | Deposit date: | 2004-09-14 | Release date: | 2004-10-05 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal Structure of IPMDH from Sulfolobus tokodaii To be Published
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4XZX
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![BU of 4xzx by Molmil](/molmil-images/mine/4xzx) | Shigella flexneri effector OspI C62S mutant | Descriptor: | ACETATE ION, ORF169b | Authors: | Nishide, A, Takagi, K, Minsoo, K, Sasakawa, C, Mizushima, T. | Deposit date: | 2015-02-05 | Release date: | 2016-02-10 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | New insights into the active site structure of Shigella effecter OspI To Be Published
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2Z7C
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![BU of 2z7c by Molmil](/molmil-images/mine/2z7c) | Crystal structure of chromatin protein alba from hyperthermophilic archaeon pyrococcus horikoshii | Descriptor: | ARGININE, DNA/RNA-binding protein Alba | Authors: | Hada, K, Nakashima, T, Osawa, T, Shimada, H, Kakuta, Y, Kimura, M. | Deposit date: | 2007-08-17 | Release date: | 2008-08-05 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure and functional analysis of an archaeal chromatin protein Alba from the hyperthermophilic archaeon Pyrococcus horikoshii OT3. Biosci.Biotechnol.Biochem., 72, 2008
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5XAV
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![BU of 5xav by Molmil](/molmil-images/mine/5xav) | Structure of PhaC from Chromobacterium sp. USM2 | Descriptor: | Intracellular polyhydroxyalkanoate synthase | Authors: | Chek, M.F, Kim, S.Y, Mori, T, Arsad, H, Samian, M.R, Sudesh, K, Hakoshima, T. | Deposit date: | 2017-03-15 | Release date: | 2017-07-26 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.479 Å) | Cite: | Structure of polyhydroxyalkanoate (PHA) synthase PhaC from Chromobacterium sp. USM2, producing biodegradable plastics Sci Rep, 7, 2017
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