5YSQ
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![BU of 5ysq by Molmil](/molmil-images/mine/5ysq) | Sulfate-complex structure of a pyrophosphate-dependent kinase in the ribokinase family provides insight into the donor-binding mode | Descriptor: | 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, SULFATE ION, TM0415 | Authors: | Nagata, R, Fujihashi, M, Miki, K. | Deposit date: | 2017-11-14 | Release date: | 2018-05-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.47 Å) | Cite: | Identification of a pyrophosphate-dependent kinase and its donor selectivity determinants. Nat Commun, 9, 2018
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5YSP
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![BU of 5ysp by Molmil](/molmil-images/mine/5ysp) | Pyrophosphate-dependent kinase in the ribokinase family complexed with a pyrophosphate analog and myo-inositol | Descriptor: | 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, MAGNESIUM ION, METHYLENEDIPHOSPHONIC ACID, ... | Authors: | Nagata, R, Fujihashi, M, Miki, K. | Deposit date: | 2017-11-14 | Release date: | 2018-05-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Identification of a pyrophosphate-dependent kinase and its donor selectivity determinants. Nat Commun, 9, 2018
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1TNV
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![BU of 1tnv by Molmil](/molmil-images/mine/1tnv) | |
1VBR
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![BU of 1vbr by Molmil](/molmil-images/mine/1vbr) | Crystal structure of complex xylanase 10B from Thermotoga maritima with xylobiose | Descriptor: | ACETIC ACID, alpha-D-xylopyranose-(1-4)-beta-D-xylopyranose, endo-1,4-beta-xylanase B | Authors: | Ihsanawati, Kumasaka, T, Kaneko, T, Nakamura, S, Tanaka, N. | Deposit date: | 2004-03-02 | Release date: | 2005-06-28 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structural basis of the substrate subsite and the highly thermal stability of xylanase 10B from Thermotoga maritima MSB8 Proteins, 61, 2005
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1ISR
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![BU of 1isr by Molmil](/molmil-images/mine/1isr) | Crystal Structure of Metabotropic Glutamate Receptor Subtype 1 Complexed with Glutamate and Gadolinium Ion | Descriptor: | GADOLINIUM ATOM, GLUTAMIC ACID, Metabotropic Glutamate Receptor subtype 1 | Authors: | Tsuchiya, D, Kunishima, N, Kamiya, N, Jingami, H, Morikawa, K. | Deposit date: | 2001-12-21 | Release date: | 2002-03-13 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (4 Å) | Cite: | Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+. Proc.Natl.Acad.Sci.USA, 99, 2002
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1VBU
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![BU of 1vbu by Molmil](/molmil-images/mine/1vbu) | Crystal structure of native xylanase 10B from Thermotoga maritima | Descriptor: | ACETIC ACID, GLYCEROL, SULFATE ION, ... | Authors: | Ihsanawati, Kumasaka, T, Kaneko, T, Nakamura, S, Tanaka, N. | Deposit date: | 2004-03-02 | Release date: | 2005-06-28 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structural basis of the substrate subsite and the highly thermal stability of xylanase 10B from Thermotoga maritima MSB8 Proteins, 61, 2005
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1ISS
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![BU of 1iss by Molmil](/molmil-images/mine/1iss) | Crystal Structure of Metabotropic Glutamate Receptor Subtype 1 Complexed with an antagonist | Descriptor: | (S)-(ALPHA)-METHYL-4-CARBOXYPHENYLGLYCINE, Metabotropic Glutamate Receptor subtype 1 | Authors: | Tsuchiya, D, Kunishima, N, Kamiya, N, Jingami, H, Morikawa, K. | Deposit date: | 2001-12-21 | Release date: | 2002-03-13 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+. Proc.Natl.Acad.Sci.USA, 99, 2002
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1WQS
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![BU of 1wqs by Molmil](/molmil-images/mine/1wqs) | Crystal structure of Norovirus 3C-like protease | Descriptor: | 3C-like protease, D(-)-TARTARIC ACID, L(+)-TARTARIC ACID, ... | Authors: | Nakamura, K, Someya, Y, Kumasaka, T, Tanaka, N. | Deposit date: | 2004-10-01 | Release date: | 2005-10-04 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | A norovirus protease structure provides insights into active and substrate binding site integrity J.Virol., 79, 2005
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3A4D
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![BU of 3a4d by Molmil](/molmil-images/mine/3a4d) | Crystal structure of Human Transthyretin (wild-type) | Descriptor: | GLYCEROL, SULFATE ION, Transthyretin | Authors: | Miyata, M. | Deposit date: | 2009-07-06 | Release date: | 2009-12-22 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Role of the Glutamic Acid 54 Residue in Transthyretin Stability and Thyroxine Binding Biochemistry, 2009
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3WQP
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![BU of 3wqp by Molmil](/molmil-images/mine/3wqp) | Crystal structure of Rubisco T289D mutant from Thermococcus kodakarensis | Descriptor: | 1,2-ETHANEDIOL, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Fujihashi, M, Nishitani, Y, Kiriyama, T, Miki, K. | Deposit date: | 2014-01-29 | Release date: | 2015-02-04 | Last modified: | 2023-12-06 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Mutation design of thermophilic Rubisco based on the three-dimensional structure enhances its activity at ambient temperature to be published
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3A11
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![BU of 3a11 by Molmil](/molmil-images/mine/3a11) | Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1 | Descriptor: | DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, Translation initiation factor eIF-2B, ... | Authors: | Nakamura, A, Fujihashi, M, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K. | Deposit date: | 2009-03-25 | Release date: | 2010-03-31 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 J.Biol.Chem., 287, 2012
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2ZU0
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3WE7
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![BU of 3we7 by Molmil](/molmil-images/mine/3we7) | Crystal Structure of Diacetylchitobiose Deacetylase from Pyrococcus horikoshii | Descriptor: | ACETIC ACID, GLYCEROL, HEXANE-1,6-DIOL, ... | Authors: | Mine, S, Nakamura, T, Fukuda, Y, Inoue, T, Uegaki, K, Sato, T. | Deposit date: | 2013-07-01 | Release date: | 2014-05-07 | Last modified: | 2014-08-20 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase Febs J., 281, 2014
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3AEI
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![BU of 3aei by Molmil](/molmil-images/mine/3aei) | Crystal structure of the prefoldin beta2 subunit from Thermococcus strain KS-1 | Descriptor: | CHLORIDE ION, Prefoldin beta subunit 2, SULFATE ION | Authors: | Ohtaki, A, Sugano, Y, Sato, T, Noguchi, K, Miyatake, H, Yohda, M. | Deposit date: | 2010-02-08 | Release date: | 2010-05-19 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Thermodynamic Characterization of the Interaction between Prefoldin and Group II Chaperonin J.Mol.Biol., 399, 2010
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6KOS
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1UA7
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![BU of 1ua7 by Molmil](/molmil-images/mine/1ua7) | Crystal Structure Analysis of Alpha-Amylase from Bacillus Subtilis complexed with Acarbose | Descriptor: | 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-alpha-D-glucopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, Alpha-amylase, ... | Authors: | Kagawa, M, Fujimoto, Z, Momma, M, Takase, K, Mizuno, H. | Deposit date: | 2003-03-03 | Release date: | 2004-05-18 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | Crystal structure of Bacillus subtilis alpha-amylase in complex with acarbose J.BACTERIOL., 185, 2003
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3A5V
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![BU of 3a5v by Molmil](/molmil-images/mine/3a5v) | Crystal structure of alpha-galactosidase I from Mortierella vinacea | Descriptor: | 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | Authors: | Fujimoto, Z, Kaneko, S, Kobayashi, H. | Deposit date: | 2009-08-12 | Release date: | 2009-08-25 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | The Tetramer Structure of the Glycoside Hydrolase Family 27 alpha-Galactosidase I from Umbelopsis vinacea Biosci.Biotechnol.Biochem., 73, 2009
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5TQU
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![BU of 5tqu by Molmil](/molmil-images/mine/5tqu) | Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor | Descriptor: | 2-[2-[[3-(1~{H}-benzimidazol-2-ylamino)propylamino]methyl]-4,6-bis(chloranyl)indol-1-yl]ethanol, GLYCEROL, METHIONINE, ... | Authors: | Barros-Alvarez, X, Hol, W.G.J. | Deposit date: | 2016-10-24 | Release date: | 2017-04-12 | Last modified: | 2023-10-04 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | From Cells to Mice to Target: Characterization of NEU-1053 (SB-443342) and Its Analogues for Treatment of Human African Trypanosomiasis. ACS Infect Dis, 3, 2017
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1BAG
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![BU of 1bag by Molmil](/molmil-images/mine/1bag) | ALPHA-AMYLASE FROM BACILLUS SUBTILIS COMPLEXED WITH MALTOPENTAOSE | Descriptor: | ALPHA-1,4-GLUCAN-4-GLUCANOHYDROLASE, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose | Authors: | Fujimoto, Z, Mizuno, H, Takase, K, Doui, N. | Deposit date: | 1998-01-30 | Release date: | 1998-10-21 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structure of a catalytic-site mutant alpha-amylase from Bacillus subtilis complexed with maltopentaose. J.Mol.Biol., 277, 1998
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8HYE
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![BU of 8hye by Molmil](/molmil-images/mine/8hye) | Structure of amino acid dehydrogenase-2752 with ligand | Descriptor: | 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Alanine dehydrogenase, ... | Authors: | Sakuraba, H, Ohshima, T. | Deposit date: | 2023-01-06 | Release date: | 2023-04-05 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Two different alanine dehydrogenases from Geobacillus kaustophilus: Their biochemical characteristics and differential expression in vegetative cells and spores. Biochim Biophys Acta Proteins Proteom, 1871, 2023
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8HYH
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![BU of 8hyh by Molmil](/molmil-images/mine/8hyh) | Structure of amino acid dehydrogenase3448 | Descriptor: | 1,2-ETHANEDIOL, Alanine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | Authors: | Sakuraba, H, Ohshima, T. | Deposit date: | 2023-01-06 | Release date: | 2023-04-05 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.39 Å) | Cite: | Two different alanine dehydrogenases from Geobacillus kaustophilus: Their biochemical characteristics and differential expression in vegetative cells and spores. Biochim Biophys Acta Proteins Proteom, 1871, 2023
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1GDV
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![BU of 1gdv by Molmil](/molmil-images/mine/1gdv) | CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION | Descriptor: | CYTOCHROME C6, HEME C | Authors: | Yamada, S, Park, S.-Y, Shimizu, H, Shiro, Y, Oku, T. | Deposit date: | 2000-10-06 | Release date: | 2001-04-06 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.57 Å) | Cite: | Structure of cytochrome c6 from the red alga Porphyra yezoensis at 1. 57 A resolution. Acta Crystallogr.,Sect.D, 56, 2000
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8TQV
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![BU of 8tqv by Molmil](/molmil-images/mine/8tqv) | Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor X20403 | Descriptor: | 4-(2-{(4M)-4-[(6M)-6-(2,5-dimethoxyphenyl)pyridin-3-yl]-1H-1,2,3-triazol-1-yl}ethyl)-N-{[1-(methoxymethyl)cyclopropyl]methyl}-N-methylbenzamide, Polyketide synthase Pks13, SULFATE ION | Authors: | Krieger, I.V, Sacchettini, J.C. | Deposit date: | 2023-08-08 | Release date: | 2024-04-24 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Inhibitors of the Thioesterase Activity of Mycobacterium tuberculosis Pks13 Discovered Using DNA-Encoded Chemical Library Screening. Acs Infect Dis., 10, 2024
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8TQG
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![BU of 8tqg by Molmil](/molmil-images/mine/8tqg) | Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor X20419 | Descriptor: | N-benzyl-2-{4-[4-(4,5-dimethoxy-1H-indole-2-carbonyl)piperazine-1-carbonyl]piperidin-1-yl}-6-methylpyrimidine-4-carboxamide, Polyketide synthase Pks13, SULFATE ION | Authors: | Krieger, I.V, Sacchettini, J.C. | Deposit date: | 2023-08-07 | Release date: | 2024-04-24 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Inhibitors of the Thioesterase Activity of Mycobacterium tuberculosis Pks13 Discovered Using DNA-Encoded Chemical Library Screening. Acs Infect Dis., 10, 2024
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8TR4
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![BU of 8tr4 by Molmil](/molmil-images/mine/8tr4) | Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor X20404 | Descriptor: | 4-(2-{(4M)-4-[(6M)-6-(2,5-dimethoxyphenyl)pyridin-3-yl]-1H-1,2,3-triazol-1-yl}ethyl)-N,N-dimethylbenzamide, Polyketide synthase Pks13, SULFATE ION | Authors: | Krieger, I.V, Sacchettini, J.C. | Deposit date: | 2023-08-09 | Release date: | 2024-04-24 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Inhibitors of the Thioesterase Activity of Mycobacterium tuberculosis Pks13 Discovered Using DNA-Encoded Chemical Library Screening. Acs Infect Dis., 10, 2024
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