Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8ZFE
DownloadVisualize
BU of 8zfe by Molmil
Cryo-EM structure of the mmGPR4-Gs receptor in pH7.2
Descriptor: G-protein coupled receptor 4
Authors:Wen, X, Rong, N.K, Yang, F, Sun, J.P.
Deposit date:2024-05-07
Release date:2025-02-26
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Evolutionary study and structural basis of proton sensing by Mus GPR4 and Xenopus GPR4.
Cell, 188, 2025
8ZFA
DownloadVisualize
BU of 8zfa by Molmil
Cryo-EM structure of the xtGPR4-Gs complex in pH7.2
Descriptor: G-protein coupled receptor 4, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Rong, N.K, Wen, X, Yang, F, Sun, J.P.
Deposit date:2024-05-07
Release date:2025-02-26
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Evolutionary study and structural basis of proton sensing by Mus GPR4 and Xenopus GPR4.
Cell, 188, 2025
8ZF9
DownloadVisualize
BU of 8zf9 by Molmil
Cryo-EM structure of the mmGPR4-Gs complex in pH7.2
Descriptor: G-protein coupled receptor 4, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Wen, X, Rong, N.K, Yang, F, Sun, J.P.
Deposit date:2024-05-07
Release date:2025-02-26
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Evolutionary study and structural basis of proton sensing by Mus GPR4 and Xenopus GPR4.
Cell, 188, 2025
8ZD1
DownloadVisualize
BU of 8zd1 by Molmil
Cryo-EM structure of the xGPR4-Gs complex in pH6.2
Descriptor: G-protein coupled receptor 4, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Rong, N.K, Wen, X, Yang, F, Sun, J.P.
Deposit date:2024-04-30
Release date:2025-02-26
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Evolutionary study and structural basis of proton sensing by Mus GPR4 and Xenopus GPR4.
Cell, 188, 2025
8ZF6
DownloadVisualize
BU of 8zf6 by Molmil
Cryo-EM structure of the xGPR4-Gs complex in pH6.7
Descriptor: G-protein coupled receptor 4, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Rong, N.K, Wen, X, Yang, F, Sun, J.P.
Deposit date:2024-05-07
Release date:2025-02-26
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Evolutionary study and structural basis of proton sensing by Mus GPR4 and Xenopus GPR4.
Cell, 188, 2025
8ZFD
DownloadVisualize
BU of 8zfd by Molmil
Cryo-EM structure of the mmGPR4-Gs receptor in pH7.6
Descriptor: G-protein coupled receptor 4
Authors:Wen, X, Rong, N.K, Yang, F, Sun, J.P.
Deposit date:2024-05-07
Release date:2025-02-26
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Evolutionary study and structural basis of proton sensing by Mus GPR4 and Xenopus GPR4.
Cell, 188, 2025
5H19
DownloadVisualize
BU of 5h19 by Molmil
EED in complex with PRC2 allosteric inhibitor EED162
Descriptor: 5-(furan-2-ylmethylamino)-9-(phenylmethyl)-8,10-dihydro-7H-[1,2,4]triazolo[3,4-a][2,7]naphthyridine-6-carbonitrile, Histone-lysine N-methyltransferase EZH2, Polycomb protein EED
Authors:Zhao, K, Zhao, M, Luo, X, Zhang, H.
Deposit date:2016-10-08
Release date:2017-01-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery and Molecular Basis of a Diverse Set of Polycomb Repressive Complex 2 Inhibitors Recognition by EED
PLoS ONE, 12, 2017
7EE5
DownloadVisualize
BU of 7ee5 by Molmil
Crystal structure of Neu5Gc bound PltC
Descriptor: N-glycolyl-alpha-neuraminic acid, N-glycolyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, Subtilase cytotoxin subunit B-like protein, ...
Authors:Liu, X.Y, Chen, Z, Gao, X.
Deposit date:2021-03-17
Release date:2021-12-22
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Molecular Insights into the Assembly and Functional Diversification of Typhoid Toxin.
Mbio, 13, 2022
7EE4
DownloadVisualize
BU of 7ee4 by Molmil
Crystal structure of Neu5Ac bound PltC
Descriptor: N-acetyl-alpha-neuraminic acid, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Liu, X.Y, Chen, Z, Gao, X.
Deposit date:2021-03-17
Release date:2021-12-22
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular Insights into the Assembly and Functional Diversification of Typhoid Toxin.
Mbio, 13, 2022
7EE6
DownloadVisualize
BU of 7ee6 by Molmil
Crystal structure of PltC toxin
Descriptor: ACETONE, CITRATE ANION, Cytolethal distending toxin subunit B family protein, ...
Authors:Liu, X.Y, Chen, Z, Gao, X.
Deposit date:2021-03-17
Release date:2021-12-22
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Molecular Insights into the Assembly and Functional Diversification of Typhoid Toxin.
Mbio, 13, 2022
7EE3
DownloadVisualize
BU of 7ee3 by Molmil
Crystal structure of PltC
Descriptor: Subtilase cytotoxin subunit B-like protein, TETRAETHYLENE GLYCOL
Authors:Liu, X.Y, Chen, Z, Gao, X.
Deposit date:2021-03-17
Release date:2021-12-22
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Molecular Insights into the Assembly and Functional Diversification of Typhoid Toxin.
Mbio, 13, 2022
8JIY
DownloadVisualize
BU of 8jiy by Molmil
A carbohydrate binding domain of a putative chondroitinase
Descriptor: DUF4955 domain-containing protein
Authors:Liu, G.C, Chang, Y.G.
Deposit date:2023-05-29
Release date:2023-09-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Identification and structural characterization of a novel chondroitin sulfate-specific carbohydrate-binding module: The first member of a new family, CBM100.
Int.J.Biol.Macromol., 255, 2024
8JCN
DownloadVisualize
BU of 8jcn by Molmil
The crystal structure of SARS-CoV-2 main protease in complex with Compound 58
Descriptor: 1-[3-(diphenoxyphosphorylamino)phenyl]ethanone, 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, ...
Authors:Zhao, Y, Zhu, Y, Rao, Z.
Deposit date:2023-05-11
Release date:2024-05-15
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:De novo design of SARS-CoV-2 main protease inhibitors with characteristic binding modes.
Structure, 32, 2024
8JCK
DownloadVisualize
BU of 8jck by Molmil
The crystal structure of SARS-CoV-2 main protease in complex with Compound 32
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Zhao, Y, Zhu, Y, Rao, Z.
Deposit date:2023-05-11
Release date:2024-05-15
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:De novo design of SARS-CoV-2 main protease inhibitors with characteristic binding modes.
Structure, 32, 2024
8JCM
DownloadVisualize
BU of 8jcm by Molmil
The crystal structure of SARS-CoV-2 main protease in complex with Compound 55
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, HYDROSULFURIC ACID, ...
Authors:Zhao, Y, Zhu, Y, Rao, Z.
Deposit date:2023-05-11
Release date:2024-05-15
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:De novo design of SARS-CoV-2 main protease inhibitors with characteristic binding modes.
Structure, 32, 2024
8JCO
DownloadVisualize
BU of 8jco by Molmil
The crystal structure of SARS-CoV-2 main protease in complex with Compound 65
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, methyl (2S)-2-[[3-(4-chloranylbutanoyl)phenyl]carbonylamino]-3-methyl-butanoate
Authors:Zhao, Y, Zhu, Y, Rao, Z.
Deposit date:2023-05-11
Release date:2024-05-15
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:De novo design of SARS-CoV-2 main protease inhibitors with characteristic binding modes.
Structure, 32, 2024
8JCL
DownloadVisualize
BU of 8jcl by Molmil
The crystal structure of SARS-CoV-2 main protease in complex with Compound 52
Descriptor: 3-ethanoyl-N-phenyl-benzamide, 3C-like proteinase nsp5, HYDROSULFURIC ACID
Authors:Zhao, Y, Zhu, Y, Rao, Z.
Deposit date:2023-05-11
Release date:2024-05-15
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:De novo design of SARS-CoV-2 main protease inhibitors with characteristic binding modes.
Structure, 32, 2024
8JCJ
DownloadVisualize
BU of 8jcj by Molmil
The crystal structure of SARS-CoV-2 main protease in complex with Compound 18
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Zhao, Y, Zhu, Y, Rao, Z.
Deposit date:2023-05-11
Release date:2024-05-15
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:De novo design of SARS-CoV-2 main protease inhibitors with characteristic binding modes.
Structure, 32, 2024
7Y3E
DownloadVisualize
BU of 7y3e by Molmil
Cryo-EM structure of Arabidopsis thaliana SOS1 in an occluded state
Descriptor: HEXADECANE, Sodium/hydrogen exchanger 7
Authors:Wang, Y, Zhao, Y, Gao, Y.
Deposit date:2022-06-10
Release date:2023-08-09
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Architecture and autoinhibitory mechanism of the plasma membrane Na + /H + antiporter SOS1 in Arabidopsis.
Nat Commun, 14, 2023
5WBH
DownloadVisualize
BU of 5wbh by Molmil
Structure of the FRB domain of mTOR bound to a substrate recruitment peptide of S6K1
Descriptor: Ribosomal protein S6 kinase beta-1, Serine/threonine-protein kinase mTOR
Authors:Pavletich, N.P, Yang, H.
Deposit date:2017-06-29
Release date:2017-12-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mechanisms of mTORC1 activation by RHEB and inhibition by PRAS40.
Nature, 552, 2017
5WBU
DownloadVisualize
BU of 5wbu by Molmil
Crystal structure of mTOR(deltaN)-mLST8-PRAS40(alpha-helix & beta-strand) complex
Descriptor: Proline-rich AKT1 substrate 1, Serine/threonine-protein kinase mTOR, Target of rapamycin complex subunit LST8
Authors:Pavletich, N.P, Yang, H.
Deposit date:2017-06-29
Release date:2017-12-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Mechanisms of mTORC1 activation by RHEB and inhibition by PRAS40.
Nature, 552, 2017
5WBY
DownloadVisualize
BU of 5wby by Molmil
Crystal structure of mTOR(deltaN)-mLST8-PRAS40(beta-strand) complex
Descriptor: Proline-rich AKT1 substrate 1, Serine/threonine-protein kinase mTOR, Target of rapamycin complex subunit LST8
Authors:Pavletich, N.P, Yang, H.
Deposit date:2017-06-29
Release date:2017-12-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Mechanisms of mTORC1 activation by RHEB and inhibition by PRAS40.
Nature, 552, 2017
8HYA
DownloadVisualize
BU of 8hya by Molmil
Cryo-EM structure of Arabidopsis thaliana SOS1 in an occluded state, with expanded TMD
Descriptor: HEXADECANE, Sodium/hydrogen exchanger 7
Authors:Wang, Y, Zhao, Y, Gao, Y.
Deposit date:2023-01-06
Release date:2023-08-09
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Architecture and autoinhibitory mechanism of the plasma membrane Na + /H + antiporter SOS1 in Arabidopsis.
Nat Commun, 14, 2023
8XIF
DownloadVisualize
BU of 8xif by Molmil
The crystal structure of the AEP domain of VACV D5
Descriptor: MAGNESIUM ION, PYROPHOSPHATE, Uncoating factor OPG117
Authors:Gan, J, Zhang, W.
Deposit date:2023-12-19
Release date:2024-05-01
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Structural and functional insights into the helicase protein E5 of Mpox virus.
Cell Discov, 10, 2024
8XJ8
DownloadVisualize
BU of 8xj8 by Molmil
The Cryo-EM structure of MPXV E5 C-terminal in complex with DNA
Descriptor: DNA (70-MER), MAGNESIUM ION, Monkeypox virus E5, ...
Authors:Zhang, W, Liu, Y, Gao, H, Gan, J.
Deposit date:2023-12-20
Release date:2024-05-01
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.67 Å)
Cite:Structural and functional insights into the helicase protein E5 of Mpox virus.
Cell Discov, 10, 2024

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon