News on 2014-12-3
Integration of Large Structures with the Main PDB Archive ( wwPDB News )
News on 2014-11-26
Beginning at January 27, 2015 crystal structures should be submitted using the wwPDB Deposition Tool. ADIT will continue to accept depositions from other experimental methods.
wwPDB launched the Deposition Tool for structures determined using X-ray crystallography on January 27, 2014 as part of the new Deposition and Annotation System. More than 3000 structures have been deposited and annotated using this system, with more than 1200 structures already released in the archive. Improvements to this system are regularly incorporated based on user feedback.
As a result of this successful release, RCSB PDB and PDBj will only accept depositions of structures determined from X-ray crystallographic experiments from the wwPDB Deposition Tool beginning January 27, 2015. At this time, the legacy ADIT deposition system will no longer accept new submissions of crystal structures. In-progress ADIT depositions of X-ray crystallographic structures will be able to access their deposition sessions until July 19, 2015.
ADIT will continue to accept depositions from other experimental methods. Deposition tools for NMR and 3DEM are being developed by the wwPDB.
Features of the new system include use of the PDBx/mmCIF data format, which produces more uniform data; the ability to replace data files pre- and post-deposition; enhanced communication; improved annotation; and geometric and experimental data checking based on recommendations from expert task forces. Detailed information and video tutorials are available.
Questions and comments should be sent to info@wwpdb.org.
Inclusion of Large Structures in the Main PDB Archive ( wwPDB News )
PDBj has released a new service 'Chemie search' and a modified 'search bar' .
PDBj has released a new service 'Chemie search'.
And the 'search bar' is modified and allows you to more quickly find the resource or service you're looking for.
wwPDB Events at IUCr (August 5-12) ( wwPDB News )
We has frozen the PDBMLplus on PDBj FTP site.
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Merged on demand for each request from PDBML and additional information (PDBMLadd):
Example: http://service.pdbj.org/mine/pdbmlplus/noatom/100d -
You can also access the PDBMLadd files.
Example: ftp://ftp.pdbj.org/XML/pdbmlplus/pdbml_add/100d-add.x ml.gz.
News on 2014-7-9
PDB Reaches a New Milestone: 100,000+ Entries ( wwPDB News )
The Road to 100,000 Entries: Launching Tools for the Next Generation ( wwPDB News )
The Road to 100,000 Entries: The Early Structures ( wwPDB News )
The Road to 100,000 Entries: Building a Community Resource ( wwPDB News )
We'll finish to provide the PDBMLplus from FTP site. The default URL of PDBMLplus was changed in jV version 4.4 for this change.
We'll finish to provide the PDBMLplus from FTP site
- Already merged file placed in the FTP site. Example: ftp://ftp.pdbj.org/XML/pdbmlplus/pdbml_xp_gz/100d.pdbmlplus.xml.gz
- Merged on demand for each request from PDBML and additional information (PDBMLadd): Example: http://service.pdbj.org/mine/pdbmlplus/noatom/100d