9EMZ

13C/15N-labelled Integral Membrane Enzyme LspA in the Lipid Cubic Phase

Summary for 9EMZ

• Entry DOI: 10.2210/pdb9emz/pdb
• Related: 5DIR
• Descriptor: Lipoprotein signal peptidase, Globomycin, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, ... (4 entities in total)
• Functional Keywords: lipid cubic phase, lspa, hydrolase, globomycin
• Biological source: Pseudomonas aeruginosa PAO1; More
• Total number of polymer chains: 8
• Total formula weight: 87305.24

Authors

Bailey, J.,Boland, C.,Caffrey, M.,Huang, C.-Y.,Gawrisch, K.,Kooshapur, H.,Ramberg, K.O.,Soubias, O.,Wiktor, M. (deposition date: 2024-03-12, release date: 2025-03-26, Last modification date: 2025-05-21)

Primary citation

Ramberg, K.O.,Boland, C.,Kooshapur, H.,Soubias, O.,Wiktor, M.,Huang, C.Y.,Bailey, J.,Gawrisch, K.,Caffrey, M.
Solid-state NMR of membrane peptides and proteins in the lipid cubic phase.
Biophys.J., 124:1387-1400, 2025

PubMed Abstract: Solid-state nuclear magnetic resonance (ssNMR) is a powerful technique for studying membrane protein structure and dynamics. Ideally, measurements are performed with the protein in a lipid bilayer. However, homogenous reconstitution of functional protein into intact bilayers at sufficiently high concentrations is often difficult to achieve. In this work, we investigate the suitability of the lipid cubic phase (LCP), which incorporates a lipid bilayer, as an alternative medium for ssNMR of integral membrane peptides and proteins. The cubic mesophase has long been used to generate membrane protein crystals for use in X-ray crystallographic structure determination by the so-called in meso method, and for protein functional and biophysical characterization. Preparing and handling protein-laden LCP is straightforward. LCP may therefore provide a valuable alternative to native membranes and other membrane mimetics for ssNMR. We tested this idea by conducting standard magic angle spinning (MAS) ssNMR experiments on LCP into which gramicidin, a ∼4 kDa transmembrane peptide, or bacterial lipoprotein signal peptidase II (LspA), a ∼20 kDa integral membrane enzyme, had been reconstituted. We report one- and two-dimensional ssNMR spectra for both gramicidin and LspA and the parameters for optimizing spectral quality. The high protein carrying capacity of the cubic phase facilitated C ssNMR at natural abundance. Lowering temperature and raising MAS frequency enabled significant improvements in spectral quality. One-dimensional C and N spectra were collected for LspA. Two-dimensional ssNMR experiments provided information on LspA dynamics and its interaction with the water and lipid components of the cubic phase. Solution NMR measurements carried out in parallel yielded information on the effect of the antibiotic, globomycin, on LspA structure and dynamics.

PubMed: 40119522
DOI: 10.1016/j.bpj.2025.03.012

Experimental method

X-RAY DIFFRACTION (3 Å)