8D2M

Covalent Schiff base complex of YedK C2A and abasic DNA

Summary for 8D2M

• Entry DOI: 10.2210/pdb8d2m/pdb
• Descriptor: Abasic site processing protein YedK, DNA (5'-D(*GP*TP*CP*(PED)P*GP*GP*A)-3') (3 entities in total)
• Functional Keywords: dna-protein crosslink, abasic site, schiff base, replication stress, dna binding protein, dna binding, protein-dna complex, dna binding protein-dna complex, dna binding protein/dna
• Biological source: Escherichia coli; More
• Total number of polymer chains: 4
• Total formula weight: 55212.36

Authors

Eichman, B.F.,Paulin, K.A. (deposition date: 2022-05-30, release date: 2023-04-12, Last modification date: 2023-10-25)

• Primary citation: Paulin, K.A.,Cortez, D.,Eichman, B.F.; The SOS response-associated peptidase (SRAP) domain of YedK catalyzes ring opening of abasic sites and reversal of its DNA-protein cross-link.; J.Biol.Chem., 298:102307-102307, 2022; PubMed: 35934051; DOI: 10.1016/j.jbc.2022.102307

Experimental method

X-RAY DIFFRACTION (1.821 Å)