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8D2M

Covalent Schiff base complex of YedK C2A and abasic DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003697molecular_functionsingle-stranded DNA binding
A0005657cellular_componentreplication fork
A0006974biological_processDNA damage response
A0036297biological_processinterstrand cross-link repair
A0097681biological_processdouble-strand break repair via alternative nonhomologous end joining
A0106300biological_processprotein-DNA covalent cross-linking repair
A0140431molecular_functionDNA-(abasic site) binding
A0160129molecular_functionprotein-DNA covalent cross-linking activity
B0003697molecular_functionsingle-stranded DNA binding
B0005657cellular_componentreplication fork
B0006974biological_processDNA damage response
B0036297biological_processinterstrand cross-link repair
B0097681biological_processdouble-strand break repair via alternative nonhomologous end joining
B0106300biological_processprotein-DNA covalent cross-linking repair
B0140431molecular_functionDNA-(abasic site) binding
B0160129molecular_functionprotein-DNA covalent cross-linking activity
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"evidences":[{"source":"PubMed","id":"35934051","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"37519246","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsSite: {"description":"Required for sensing abasic sites","evidences":[{"source":"PubMed","id":"31504793","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsSite: {"description":"Required to stabilize abasic sites","evidences":[{"source":"PubMed","id":"31235915","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

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PDB entries from 2026-04-08

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