6SKG

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

This is a large structure.

Summary for 6SKG

Related6SKF
EMDB information10223 10224
Descriptor16S ribosomal RNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ... (67 entities in total)
Functional Keywordst. kodakarensis, ac4c deletion, ribosome, cryo-em
Biological sourceThermococcus kodakarensis
Total number of polymer chains69
Total molecular weight2497104.2
Authors
Matzov, D.,Sas-Chen, A.,Thomas, J.M.,Santangelo, T.,Meier, J.L.,Schwartz, S.,Shalev-Benami, M. (deposition date: 2019-08-15, release date: 2020-07-29, Last modification date: 2020-08-05)
Primary citation
Sas-Chen, A.,Thomas, J.M.,Matzov, D.,Taoka, M.,Nance, K.D.,Nir, R.,Bryson, K.M.,Shachar, R.,Liman, G.L.S.,Burkhart, B.W.,Gamage, S.T.,Nobe, Y.,Briney, C.A.,Levy, M.J.,Fuchs, R.T.,Robb, G.B.,Hartmann, J.,Sharma, S.,Lin, Q.,Florens, L.,Washburn, M.P.,Isobe, T.,Santangelo, T.J.,Shalev-Benami, M.,Meier, J.L.,Schwartz, S.
Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping.
Nature, 583:638-643, 2020
PubMed: 32555463 (PDB entries with the same primary citation)
DOI: 10.1038/s41586-020-2418-2
MImport into Mendeley
Experimental method
ELECTRON MICROSCOPY
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Structure validation

ClashscoreRamachandran outliersSidechain outliersRNA backbone4 0.0% 0.1% 0.55MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all EM structures
Download full validation reportDownload
167518
PDB entries from 2020-08-12