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- EMDB-10224: Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 dele... -

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Basic information

Entry
Database: EMDB / ID: EMD-10224
TitleCryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
Map data30S head body postprocess
Sample
  • Complex: 70S ribosome from Thermococcus kodakarensisRibosome
    • RNA: x 3 types
    • Protein or peptide: x 62 types
  • Ligand: x 2 types
Function / homology
Function and homology information


ribonuclease P activity / tRNA 5'-leader removal / maturation of SSU-rRNA / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosomal large subunit biogenesis / cytosolic ribosome assembly / ribosomal small subunit biogenesis / small ribosomal subunit rRNA binding / ribosomal small subunit assembly ...ribonuclease P activity / tRNA 5'-leader removal / maturation of SSU-rRNA / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosomal large subunit biogenesis / cytosolic ribosome assembly / ribosomal small subunit biogenesis / small ribosomal subunit rRNA binding / ribosomal small subunit assembly / ribosomal large subunit assembly / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / ribosome biogenesis / small ribosomal subunit / 5S rRNA binding / cytosolic large ribosomal subunit / cytoplasmic translation / tRNA binding / negative regulation of translation / rRNA binding / ribosome / structural constituent of ribosome / translation / ribonucleoprotein complex / mRNA binding / RNA binding / zinc ion binding / cytosol / cytoplasm
Similarity search - Function
Ribosome maturation protein Sdo1/SBDS / Ribosome maturation protein SBDS, conserved site / Ribosome maturation protein SDO1/SBDS, central domain / Ribosome maturation protein Sdo1/SBDS, central domain superfamily / SBDS protein, domain II / Uncharacterized protein family UPF0023 signature. / Ribosome maturation protein SDO1/SBDS, N-terminal / Ribosome maturation protein SBDS, N-terminal domain superfamily / Ribosome maturation protein Sdo1/SBDS-like / Shwachman-Bodian-Diamond syndrome (SBDS) protein ...Ribosome maturation protein Sdo1/SBDS / Ribosome maturation protein SBDS, conserved site / Ribosome maturation protein SDO1/SBDS, central domain / Ribosome maturation protein Sdo1/SBDS, central domain superfamily / SBDS protein, domain II / Uncharacterized protein family UPF0023 signature. / Ribosome maturation protein SDO1/SBDS, N-terminal / Ribosome maturation protein SBDS, N-terminal domain superfamily / Ribosome maturation protein Sdo1/SBDS-like / Shwachman-Bodian-Diamond syndrome (SBDS) protein / Small zinc finger protein HVO_2753-like, zinc-binding pocket / Small zinc finger protein HVO_2753-like / Small zinc finger protein HVO_2753-like, Zn-binding pocket / Ribosomal protein L14e / : / Ribosomal protein L40e, archaeal / : / Ribosomal protein S9, archaeal / Ribosomal protein S13, archaeal / Ribosomal protein S17, archaeal / Ribosomal protein S6e, archaeal / Ribosomal protein S4, archaeal / Ribosomal protein S12, archaea / Ribosomal protein S3, archaeal / 30S ribosomal protein S3Ae / Ribosomal protein S7, archaeal / Ribosomal protein S19e, archaeal / Ribosomal protein S11, archaeal / Ribosomal protein S2, archaeal / Ribosomal protein S14, type Z, archaeal / Ribosomal protein S8e, archaeal / Ribosomal protein L15e, archaeal / Ribosomal protein L30, archaeal / Ribosomal protein L6P, archaea / Ribosomal protein L14P, archaeal / Ribosomal protein L21e, archaeal / Ribosomal protein L18e, archaea / Ribosomal protein L10e, archaea / Ribosomal protein L32e, archaeal / Ribosomal protein L3, archaeal / Ribosomal protein L4, archaea / Ribosomal protein L5, archaeal / Ribosomal protein L7Ae, archaea / Ribosomal protein L24e / Ribosomal protein L30e / Ribosomal protein L2, archaeal-type / Ribosomal L15/L27a, N-terminal / Ribosomal protein L23 / EF-G domain III/V-like / metallochaperone-like domain / TRASH domain / Ribosomal protein S19e, conserved site / Ribosomal protein S10, eukaryotic/archaeal / Ribosomal protein S17e, conserved site / Zinc finger, C2H2 type / 40S ribosomal protein S29/30S ribosomal protein S14 type Z / Ribosomal protein S3, eukaryotic/archaeal / Ribosomal protein L10e, conserved site / Ribosomal protein L10e / Ribosomal protein S19A/S15e / Ribosomal protein S3Ae, conserved site / Ribosomal protein S17e / Ribosomal protein S17e-like superfamily / Ribosomal protein S2, eukaryotic/archaeal / Ribosomal protein S19e / Ribosomal_S19e / Ribosomal protein S5, eukaryotic/archaeal / Ribosomal protein S8e, conserved site / Ribosomal protein L24e, conserved site / Ribosomal protein L34e, conserved site / Ribosomal protein S4e, N-terminal, conserved site / Ribosomal S17 / Ribosomal protein S19e signature. / Ribosomal protein L44e / Ribosomal protein S19e / Ribosomal protein S27, zinc-binding domain superfamily / Ribosomal protein S17, archaeal/eukaryotic / Ribosomal protein S27 / Ribosomal protein S28e conserved site / Ribosomal protein S6/S6e/A/B/2, conserved site / Ribosomal protein S28e / Ribosomal protein L30e, conserved site / Ribosomal protein S4e, N-terminal / Ribosomal protein S23, eukaryotic/archaeal / Ribosomal protein S3Ae / Ribosomal S3Ae family / Ribosomal protein L44 / Ribosomal protein L34Ae / Ribosomal protein S8e / Ribosomal protein S4, KOW domain / Ribosomal protein S5/S7, eukaryotic/archaeal / zinc finger / Ribosomal protein S4e / Ribosomal protein S4e, central region / Ribosomal protein S4e, central domain superfamily / Ribosomal protein S6e / Ribosomal protein S13/S15, N-terminal / Ribosomal protein S15P / Ribosomal S13/S15 N-terminal domain / Ribosomal protein S6e
Similarity search - Domain/homology
Small ribosomal subunit protein eS17 / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein uL2 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein uL22 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein uL29 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL16 ...Small ribosomal subunit protein eS17 / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein uL2 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein uL22 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein uL29 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein uL3 / Small ribosomal subunit protein eS6 / Large ribosomal subunit protein eL43 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein uS12 / Large ribosomal subunit protein eL30 / Small ribosomal subunit protein eS27 / Large ribosomal subunit protein eL42 / LSU ribosomal protein L41E / Predicted zinc-ribbon RNA-binding protein involved in translation / Nucleic acid-binding protein, containing C2H2 zinc-finger / Small ribosomal subunit protein uS10 / Small ribosomal subunit protein eS8 / Small ribosomal subunit protein uS15 / Small ribosomal subunit protein eS1 / Small ribosomal subunit protein eS19 / Large ribosomal subunit protein eL8 / Small ribosomal subunit protein eS28 / Large ribosomal subunit protein eL24 / Large ribosomal subunit protein eL20 / Large ribosomal subunit protein eL31 / Large ribosomal subunit protein eL39 / Large ribosomal subunit protein eL15 / Large ribosomal subunit protein eL21 / Large ribosomal subunit protein eL37 / Ribosome maturation protein SDO1 homolog / Small ribosomal subunit protein eS24 / Small ribosomal subunit protein uS2 / Large ribosomal subunit protein eL40 / Small ribosomal subunit protein uS9 / Large ribosomal subunit protein eL14 / Small ribosomal subunit protein uS13 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS11 / Large ribosomal subunit protein eL18 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein eL34 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL24 / Small ribosomal subunit protein eS4 / Large ribosomal subunit protein uL5 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS8 / Large ribosomal subunit protein uL6 / Large ribosomal subunit protein eL32 / Large ribosomal subunit protein eL19 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL30 / Large ribosomal subunit protein uL15
Similarity search - Component
Biological speciesThermococcus kodakarensis (archaea)
Methodsingle particle reconstruction / cryo EM / Resolution: 2.65 Å
AuthorsMatzov D / Sas-Chen A / Thomas JM / Santangelo T / Meier JL / Schwartz S / Shalev-Benami M
CitationJournal: Nature / Year: 2020
Title: Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping.
Authors: Aldema Sas-Chen / Justin M Thomas / Donna Matzov / Masato Taoka / Kellie D Nance / Ronit Nir / Keri M Bryson / Ran Shachar / Geraldy L S Liman / Brett W Burkhart / Supuni Thalalla Gamage / ...Authors: Aldema Sas-Chen / Justin M Thomas / Donna Matzov / Masato Taoka / Kellie D Nance / Ronit Nir / Keri M Bryson / Ran Shachar / Geraldy L S Liman / Brett W Burkhart / Supuni Thalalla Gamage / Yuko Nobe / Chloe A Briney / Michaella J Levy / Ryan T Fuchs / G Brett Robb / Jesse Hartmann / Sunny Sharma / Qishan Lin / Laurence Florens / Michael P Washburn / Toshiaki Isobe / Thomas J Santangelo / Moran Shalev-Benami / Jordan L Meier / Schraga Schwartz /
Abstract: N-acetylcytidine (acC) is an ancient and highly conserved RNA modification that is present on tRNA and rRNA and has recently been investigated in eukaryotic mRNA. However, the distribution, dynamics ...N-acetylcytidine (acC) is an ancient and highly conserved RNA modification that is present on tRNA and rRNA and has recently been investigated in eukaryotic mRNA. However, the distribution, dynamics and functions of cytidine acetylation have yet to be fully elucidated. Here we report acC-seq, a chemical genomic method for the transcriptome-wide quantitative mapping of acC at single-nucleotide resolution. In human and yeast mRNAs, acC sites are not detected but can be induced-at a conserved sequence motif-via the ectopic overexpression of eukaryotic acetyltransferase complexes. By contrast, cross-evolutionary profiling revealed unprecedented levels of acC across hundreds of residues in rRNA, tRNA, non-coding RNA and mRNA from hyperthermophilic archaea. AcC is markedly induced in response to increases in temperature, and acetyltransferase-deficient archaeal strains exhibit temperature-dependent growth defects. Visualization of wild-type and acetyltransferase-deficient archaeal ribosomes by cryo-electron microscopy provided structural insights into the temperature-dependent distribution of acC and its potential thermoadaptive role. Our studies quantitatively define the acC landscape, providing a technical and conceptual foundation for elucidating the role of this modification in biology and disease.
History
DepositionAug 15, 2019-
Header (metadata) releaseJul 29, 2020-
Map releaseJul 29, 2020-
UpdateDec 2, 2020-
Current statusDec 2, 2020Processing site: PDBe / Status: Released

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Structure visualization

Movie
  • Surface view with section colored by density value
  • Surface level: 0.04
  • Imaged by UCSF Chimera
  • Download
  • Surface view colored by height
  • Surface level: 0.04
  • Imaged by UCSF Chimera
  • Download
  • Surface view with fitted model
  • Atomic models: PDB-6skg
  • Surface level: 0.04
  • Imaged by UCSF Chimera
  • Download
Movie viewer
Structure viewerEM map:
SurfViewMolmilJmol/JSmol
Supplemental images

emd_10224.png

Downloads & links

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Map

FileDownload / File: emd_10224.map.gz / Format: CCP4 / Size: 421.9 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Annotation30S head body postprocess
Voxel sizeX=Y=Z: 0.85 Å
Density
Contour LevelBy AUTHOR: 0.05 / Movie #1: 0.04
Minimum - Maximum-0.2655873 - 0.49709478
Average (Standard dev.)0.00042904046 (±0.012407327)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions480480480
Spacing480480480
CellA=B=C: 408.0 Å
α=β=γ: 90.0 °

CCP4 map header:

modeImage stored as Reals
Å/pix. X/Y/Z0.850.850.85
M x/y/z480480480
origin x/y/z0.0000.0000.000
length x/y/z408.000408.000408.000
α/β/γ90.00090.00090.000
MAP C/R/S123
start NC/NR/NS000
NC/NR/NS480480480
D min/max/mean-0.2660.4970.000

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Supplemental data

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Additional map: 50S masked unsharpened

Fileemd_10224_additional_1.map
Annotation50S masked unsharpened
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Additional map: 30S body masked unsharpened

Fileemd_10224_additional_2.map
Annotation30S body masked unsharpened
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Additional map: 30S head masked unsharpened

Fileemd_10224_additional_3.map
Annotation30S head masked unsharpened
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Additional map: 30S head masked postprocess

Fileemd_10224_additional_4.map
Annotation30S head masked postprocess
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Additional map: 50S masked postprocess

Fileemd_10224_additional_5.map
Annotation50S masked postprocess
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Additional map: 50S masked postprocess

Fileemd_10224_additional_6.map
Annotation50S masked postprocess
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Sample components

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Entire : 70S ribosome from Thermococcus kodakarensis

EntireName: 70S ribosome from Thermococcus kodakarensisRibosome
Components
  • Complex: 70S ribosome from Thermococcus kodakarensisRibosome
    • RNA: 16S ribosomal RNA
    • Protein or peptide: 30S ribosomal protein S2
    • Protein or peptide: 30S ribosomal protein S3
    • Protein or peptide: 30S ribosomal protein S3AeRibosome
    • Protein or peptide: 30S ribosomal protein S4
    • Protein or peptide: 30S ribosomal protein S4eRibosome
    • Protein or peptide: 30S ribosomal protein S5
    • Protein or peptide: 30S ribosomal protein S6eRibosome
    • Protein or peptide: 30S ribosomal protein S7
    • Protein or peptide: 30S ribosomal protein S8
    • Protein or peptide: 30S ribosomal protein S8eRibosome
    • Protein or peptide: 30S ribosomal protein S9
    • Protein or peptide: 30S ribosomal protein S10
    • Protein or peptide: 30S ribosomal protein S11
    • Protein or peptide: 30S ribosomal protein S12
    • Protein or peptide: 30S ribosomal protein S13
    • Protein or peptide: 30S ribosomal protein S15
    • Protein or peptide: 30S ribosomal protein S14 type ZRibosome
    • Protein or peptide: 30S ribosomal protein S17
    • Protein or peptide: 30S ribosomal protein S17eRibosome
    • Protein or peptide: 30S ribosomal protein S19
    • Protein or peptide: 30S ribosomal protein S19eRibosome
    • Protein or peptide: 30S ribosomal protein S24eRibosome
    • Protein or peptide: 30S ribosomal protein S27eRibosome
    • Protein or peptide: 30S ribosomal protein S28eRibosome
    • Protein or peptide: Predicted zinc-ribbon RNA-binding protein involved in translation
    • RNA: 23S ribosomal RNA
    • RNA: 5S ribosomal RNA
    • Protein or peptide: 50S ribosomal protein L2
    • Protein or peptide: 50S ribosomal protein L3
    • Protein or peptide: 50S ribosomal protein L4
    • Protein or peptide: 50S ribosomal protein L5
    • Protein or peptide: 50S ribosomal protein L6
    • Protein or peptide: 50S ribosomal protein L7AeRibosome
    • Protein or peptide: 50S ribosomal protein L10eRibosome
    • Protein or peptide: 50S ribosomal protein L13
    • Protein or peptide: 50S ribosomal protein L14
    • Protein or peptide: 50S ribosomal protein L14eRibosome
    • Protein or peptide: 50S ribosomal protein L15
    • Protein or peptide: 50S ribosomal protein L15eRibosome
    • Protein or peptide: 50S ribosomal protein L18
    • Protein or peptide: 50S ribosomal protein L18eRibosome
    • Protein or peptide: 50S ribosomal protein L19eRibosome
    • Protein or peptide: 50S ribosomal protein L18AeRibosome
    • Protein or peptide: 50S ribosomal protein L21eRibosome
    • Protein or peptide: 50S ribosomal protein L22
    • Protein or peptide: 50S ribosomal protein L23
    • Protein or peptide: 50S ribosomal protein L24
    • Protein or peptide: 50S ribosomal protein L24eRibosome
    • Protein or peptide: 50S ribosomal protein L29
    • Protein or peptide: 50S ribosomal protein L30
    • Protein or peptide: 50S ribosomal protein L30eRibosome
    • Protein or peptide: 50S ribosomal protein L31eRibosome
    • Protein or peptide: 50S ribosomal protein L32eRibosome
    • Protein or peptide: 50S ribosomal protein L34eRibosome
    • Protein or peptide: Ribosomal protein eL35ARibosome
    • Protein or peptide: 50S ribosomal protein L37AeRibosome
    • Protein or peptide: 50S ribosomal protein L37eRibosome
    • Protein or peptide: 50S ribosomal protein L39eRibosome
    • Protein or peptide: 50S ribosomal protein L40eRibosome
    • Protein or peptide: LSU ribosomal protein L41E
    • Protein or peptide: 50S ribosomal protein L44eRibosome
    • Protein or peptide: Nucleic acid-binding protein, containing C2H2 zinc-finger
    • Protein or peptide: Predicted exosome subunit, UPF0023 family
    • Protein or peptide: Unknown ribosomal protein
  • Ligand: ZINC ION
  • Ligand: water

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Supramolecule #1: 70S ribosome from Thermococcus kodakarensis

SupramoleculeName: 70S ribosome from Thermococcus kodakarensis / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#65
Source (natural)Organism: Thermococcus kodakarensis (archaea)

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Macromolecule #1: 16S ribosomal RNA

MacromoleculeName: 16S ribosomal RNA / type: rna / ID: 1 / Number of copies: 1
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 487.394938 KDa
SequenceString: AUUCCGG(OMU)UG AUCCUG(5MC)CGG AGGCCACUGC UAUGGGGGUC CGACUAAGCC AUGCGAGUCA UGGGGCGCGC UC UGCGCGC ACCGGCGGAC GGCUCAGUAA CACGUCGGUA AC(OMC)UACCCUC G(OMG)GAGGGGGA UAACCCCGGG AAACU GG(OMG)G ...String:
AUUCCGG(OMU)UG AUCCUG(5MC)CGG AGGCCACUGC UAUGGGGGUC CGACUAAGCC AUGCGAGUCA UGGGGCGCGC UC UGCGCGC ACCGGCGGAC GGCUCAGUAA CACGUCGGUA AC(OMC)UACCCUC G(OMG)GAGGGGGA UAACCCCGGG AAACU GG(OMG)G CUAAUCCCCC AUAGGCCUGA GGUACUGGAA GGUCCUCAGG CCGAAAGGGG CAUCUGCCCG CCCGAGGAUG (OMG)GCCGGCGG C(OMC)GAUUAGGU AGUUGGUGGG GUAACGGCCC ACCAAGCCGA AGAUCGGUAC GGGCCAUGAG AGU GGGAGC CCGGAGAUGG ACACUGAGAC ACG(OMG)GUCCAG GCCCUACGGG GCG(5MC)AGCAGG CG(5MC)GA(A2M)AC C UCCGCAAUGC GGGCAACCGC GACGG(OMG)GGGA CCCCCAGUGC CGUGGCAUAG CCACGGCUUU UCCGGAGUGU AAAAA GCUC CGGGAAUAAG G(OMG)CUG(OMG)GCAA GG(5MC)CGGUGG(5MC) AGCCGCCG(5MC)G GUAA(OMU)ACCGG CG GCCCGAG U(OMG)GU(OMG)GCCGC UAUUAUUGGG CCUAAAGCGU CCGUAGCC(OMG)G GCCCGUAAGU CCCUGGCGAA A UCCCACGG CUCAACCGUG G(OMG)GCUUGCUG GGGAUACUGC GGGCCUUGGG ACCGGGAGAG GCCGGGGGUA CCCCUG (OMG)GG UAGG(OMG)GUGAA AUCCUAUAAU CCCAGGG(OMG)GA CCGCCAGU(OMG)G (5MC)GAAGGCGCC CGG (5MC)UGGAA CGGGUCCGAC GGUGAGGGAC GAAGGCCAGG GGAGCGAACC GGAUUAGAUA CCCGGGUAGU C(OMC) (OMU)GGCUGU AAAGGAUGCG (OMG)GCUAGGUGU CGGGCGAGCU UCGAGCUCGC CCGGUGCCGG AGGGAAGCCG UUAAG (OMC)CCG CCGCCUG(OMG)GG AGUACGGCCG CAA(OMG)G(5MC)UGAA ACUUAAAGGA AUUGGCGGGG GAGCACUACA AG(OMG)GGUGGA GCGUGCGGUU UAAUU(OMG)GAU(5MU) (LV2)AACG(5MC)(OMC)GGG AACCUCACCG GGGGCGA CG GCAGGAUGAA GGCCAG(OMG)CUG AAGGUCUUGC CGGACACGCC GAGAGGA(OMG)(2MG)U GCAUGG(5MC)(5MC) G (5MC)(5MC)GUCAGCUC GUAC(OMU)GUGAG GCGUCCACUU AAGUGUGGUA ACGAGCGAGA CCCGCGCCCC CAGUUGC CA GUCCUCCCCG CUGGGGAGGA GGCACUCUGG GG(OMG)GACCGCC GGCGAUAAGC CGGAGGAAGG AGCGGGCGAC GGUA GGUCA GUAUGCCCCG AAACCCCCGG GCUACACGCG (5MC)GCUACAAUG GGCGGGACAA UGGGAUCCGA CCCCGAAAG (OMG)GGAAGGGAA UCCCCUAAAC CCGCCCUCAG UUCGGAUCGC GGG(5MC)UGCAAC UCGCCCGCGU GAAGCUGGAA UC CCUAGUA CCCG(5MC)GUGUC AUCAUCGCG(5MC) GGCGAAUACG UCCCUGCUCC UUGCACACAC (5MC)G(OMC)CCG (OMU)CA (OMC)UCCACCCGA GCGGGGUCCG GGUGAGGCCU GGUCUCCCUU CGGGGAGGCC GGGUCGAGCC UGGGCUCCG UGAGGGGGGA GAAGUCGUA(6MZ) CAAGGUAGCC GUAGGGG(MA6)(MA6)C CUACGG(5MC)U(5MC)G AUCACCUCCU AUCGCCGGA

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Macromolecule #27: 23S ribosomal RNA

MacromoleculeName: 23S ribosomal RNA / type: rna / ID: 27 / Number of copies: 1
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 987.981438 KDa
SequenceString: AACGUCCCGC CCGGUGGCAA CUAAGCCGCC UGGUGGAUGG CUCGGCUCGG GGCG(5MC)CGACG AA(OMG)G(OMG) (OMC)GUG GCAAGCUGCG AUAAGCCCCG G(OMC)GAGGCGCA GGCAGCCGUC GAACCGGGGA UGCCCGAAUG GGACCUCC C GCGGCUUUUG ...String:
AACGUCCCGC CCGGUGGCAA CUAAGCCGCC UGGUGGAUGG CUCGGCUCGG GGCG(5MC)CGACG AA(OMG)G(OMG) (OMC)GUG GCAAGCUGCG AUAAGCCCCG G(OMC)GAGGCGCA GGCAGCCGUC GAACCGGGGA UGCCCGAAUG GGACCUCC C GCGGCUUUUG CCGCACUCCC AGUCGGGAGG GGGAACGCGG GGAAUUGAAA CAUCUUAGUA CCCGCAGGAA AAGAAA (OMG)CA AAAGCGAUGC CGUUAGUAGG GGCGACCGAA AGCGGCACAG GGCAAACUGA ACCCCGGGCC GAAAGGUUCG (OMG)GGGAUGUG GUGUUGUAGG GCCCGCGGAG GAGCCCUGGG GGCGAAGCCG AAGUC(OMC)GCUG GAACGCGGCG CCG GAGAG(OMG) GUGAAAGCCC CGUAGGCGUA AGCCCCCGAG CUCCUGCGGU GUCCCUGAGU ACCGUCGGUC GGAUAUCCGG CGGGAAGCU GGGAGGCA(OMU)C GGCUCCCAAC CCUAAAUACG UCCCGAGACC GAUAGCGAAC UAGUACCGUG (A2M)G (OMG)GAAAGC UGAAAAGCAC CCCGGGAGGG GGGUGAAAAG AGCCUGAAAC CAGGCGGCGA UAGGAGGGUG CGGCCCGAA A(OMG)GGUUGACC CUCCCCGAAG GAAACACGGG CGACCGUGGA GUACGAGGGG AGGUGACCGG GGUUGCACCG UCCG (OMU)CUUG GAUCACGG(OMG)G CA(OMG)GGAGUUC ACCCGAGCGG CGAGGUUAAG GGGGUCAACC CCGAAGCCGC AGG GAAACC GACAGGUCCG CAGCCCGUAA GGGCGAGGGA CGGGGUGUGA AAGCGCCCGG AGUCGCUCGG GUGAGACCC(OMG) AAGCCGGUC GAUCUAGCCC GGGGCAGGG(5MU) GAA(OMG)UCCCUC AACAGAGGG(A2M) UGGAGGCCCG CUAGGGGUG (OMC)UG(OMG)CG(5MU)GCA (A2M)UUCGCUCCC GUGACCCCGG GCUAGGGGUG AAA(OMG)GCCAAU CGAGGCCGGC GAU(A2M)GCUGG UUCCCGCCGA AUUAUCCCCC AGGAUAGCCC GGCCGGAGGU AGGCAGUGGG GUAGAGCACU GAUUGGG GG UUUAGGGGGC GAAAGCCUCC GGCUCCCUGU CAAACUCCGA ACCCACUGCC GCCGUAGAUG GCCGGAGUAG GGGGGCGG U GUAAGCCGUC ACCCGAGAGG GGAACAACCC AGACCGGGGU UAAGGCCCCA AAGUGCCGGC UAAG(OMU)GUUAC UCCAA AGGG UGUCCCUGGC CUUAGACAGC GGGGAGGUAG GCUUAGAAGC AGCCAUCCUU UAAAGAGUGC GUAACAGCUC ACCCGU CGA GGUCAGGGGC CCCGAAAAUG GACGGGGCUU AAGCCGGCCG CCGAGACCCC GGCGCACGGA CCGAUUGGUC CGUGAUC GG GUAGGC(OMG)GGC GUGCCGAUGG GG(5MC)GGAAGCC GGGCCGUGAG GUCCGGUGGA CCCGUCGGUA UUGCGGAUCC UGCCGGGAG (OMU)AGCAGCAUA GCCGGGUGAG AAUCCCGGCC GCCGUAGGGG CCAGGGUUCC ACGGCAAUGU UCGUCAG CC GUGGGUUAG(OMU) CGGUCCUAAC CCGACCCGUA ACUCGGC(OMG)UC GGGGAAAGGG AAAC(OMG)GGUUU AUAUUC CCG UACCGCGGUG GUAGGUGCGG CAACGCAAGC CCGAGGGGUG ACGCCUCGGG GUAGGCGGAC CGGUCCACAA GGCCGGC UA AGCGUAUAAG CCCGGGGAGU GCCGUAAUGG CGAGAACCGG GUGAAAGCGC GAAUGGCCUC CCGUAAGGGG GGUUCCGC C GAUCCCUGGG GCCCGUGAAA AGCCCCUCGG GAACGAUCCA CCGCGACCGU ACCGAGAACC GACACUGG(5MU)G CCCCU GGG(OMU) GAGAAGCCUA AGGCGUGUCG GGGGAAACCC AGCCGAGGGA ACU(OMC)GGCAAA UUGGCCCCGU AACUUCGG G AGAAGGGG(5MU)G CCUGCGGGUG UGUAACCCGC AGGUCGCAGU GACUAGG(OMG)GG GCCCGACUGU UUAGUAAAAA C ACAGGUCC CAGCUAGCCC GAAAGGGUUU GUACUGGG(OMG)C C(OMG)ACGCCUGC (5MC)CAG(OMU)GCCGG UAUGUG AAG CCCGGGUACA A(OMC)CGGGUGAA GCACCG(OMG)UAA AC(OMG)GCGGGGG UAACUAUAAC CCUCUUAAGG UAG (OMC)GAAAU UC(5MC)UUGUCGG UUAAAUG(5MC)CG AC(5MC)UGCAUGA AUGGCGUA(A2M)C GAGGUCCCCA CUGU (OMC)CCCG GCUGGGGCCC GG(OMC)GAAACCU CUGCCAGGCG CAUAUGCCUG GGACCUCCGG UGGGAA(OMG)(OMC)G AAGACCCCAU GGAGCUUUAC UGCAGCCUGC CGUUGCCGUA CGGCGGGGGG UGCGCAGCGU AGGCGGGAGG CGUCGAAGCC CGCCCUCCG GGGCGGGUGG AGCCGCCCAU GAGACACCGC CCACCCUCUG CCGUACGGCU AACCCGCGGA AGCGGGGAC (A2M)GCGGUAGGU GGGCAGUUUG GCUG(OMG)GGCGG CACACCCUCG AAAAGGUAUC (OMG)AGGGUGCCC (OMU)AAG GUCGG CUCAGGCGGG UCAGGAAUCC GCCGUAGAG(5MU) GCAAGGGCAA AAGCCGGCCU GACUGGACCC GUAACAGA (OMG) GC(OMG)GGUCCAG CCGCGAAAGC GUGGCCUAGC GAACCCCUGU GCCUCCCCGG UGGG(OMG)GCCAG (OMG) (OMG)AUGACAG AAAAGC(OMU)AC(OMC) CUGG(OMG)GA(4SU)AA CAGAGUCGUC UCGGGCGAGA GCCCA(4SU)AU C GACCCCGAGG (OMC)UUGCUACCU (5MC)GCUGUCGGC UCUUCCCAUC CUGGCCCUGC AGCAG(OMG)G(OMG)CC AAG GGUGGG GG(OMU)GUUCACC CAUUAAAG(OMG)G GAACGUGAGC UGGG(5MC)UUAGA CCGUCGUGAG ACAGGUCGGA UG CUAUCUA CCGGA(OMG)GUGU UGGCCGCCUG AG(OMG)GGAAGGC UCCCCCAGUA CGAGAGGAAC AGGGAGCCGC GGCCU CUGG UCUACCGGUU GUCCUACAGG GCAUAGCCGG GCAGCUACGC CGCAGCCGAU AAGGCCUGAA AGCAUCUAAG GCCGAA GC(OMG) GCCCCCGAAA ACAGGCGGCC ACUCCUGGGC GUUGGGCCUG GGCGACCGGU CCGUUGCCCA GGACG(A2M)GGG CCCGGGAAGA AGACCCGGUU GAUGGGG(OMC)GG GGAUGUAAGC GGGAAGGGAA ACCGACCCGU UCAGUCUGCC GCUCCC AAC AGCCCGAGUG CUACCGGGC

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Macromolecule #28: 5S ribosomal RNA

MacromoleculeName: 5S ribosomal RNA / type: rna / ID: 28 / Number of copies: 1
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 40.744309 KDa
SequenceString:
GGUACGGCGG CCAUAGCGGC GGGGCCACAC CCGGUCUCGU UUCGACCCCG GAAGUUAAGC CCGCCAGCGU UCCCGGGUGU ACUGCCCUC CGAGAGGGGG CGGGAAACCG GGAACGCCGC CGGCCAC

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Macromolecule #2: 30S ribosomal protein S2

MacromoleculeName: 30S ribosomal protein S2 / type: protein_or_peptide / ID: 2 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 23.039793 KDa
SequenceString: MEEYLVPLDQ YLAAGVHIGT QQKTKDMKKF IYRVRQDGLY VLDVRKTDER LRVAGKFLAK FDPESILAVS VRLYGQRPVK KFGEVTGAK AIPGRFLPGT MTNPQVKNFI EPDVLIVTDP RADHQALKEA VEIGIPIVAL VDTENFLSYV DIAIPTNNKG R KALALIYW ...String:
MEEYLVPLDQ YLAAGVHIGT QQKTKDMKKF IYRVRQDGLY VLDVRKTDER LRVAGKFLAK FDPESILAVS VRLYGQRPVK KFGEVTGAK AIPGRFLPGT MTNPQVKNFI EPDVLIVTDP RADHQALKEA VEIGIPIVAL VDTENFLSYV DIAIPTNNKG R KALALIYW ILAREVLYNR KEIESREDFK IPVEDFEMRI IRT

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Macromolecule #3: 30S ribosomal protein S3

MacromoleculeName: 30S ribosomal protein S3 / type: protein_or_peptide / ID: 3 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 23.39016 KDa
SequenceString: MAIERYFIKE GVKEMLIDEF LEKELRRAGY GGLDIKKTPL GTKVTIFAAN PGYVIGRGGR RIRELTRILE KQFGLENPQI EVEEIKNPY LNAKVQAVRL AQALERGIHF RRAAYSAIRA IMRNGARGVE IRLSGKLTGE RAKSVRFYQG YLAKVGNPAE T LVSRGYAQ ...String:
MAIERYFIKE GVKEMLIDEF LEKELRRAGY GGLDIKKTPL GTKVTIFAAN PGYVIGRGGR RIRELTRILE KQFGLENPQI EVEEIKNPY LNAKVQAVRL AQALERGIHF RRAAYSAIRA IMRNGARGVE IRLSGKLTGE RAKSVRFYQG YLAKVGNPAE T LVSRGYAQ AQLKLGVIGV KVSIMPPDAK LPDEIEIKEI VEEEVSANEA Q

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Macromolecule #4: 30S ribosomal protein S3Ae

MacromoleculeName: 30S ribosomal protein S3Ae / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 23.06492 KDa
SequenceString: MARGNPRKRA AAAKDKWKMK EWYIVYAPDF FGSKEIGLTP ADDPEKVIGR VIETTLKDLT GDFTKGHVKL YFQVYDVKGQ NAYTKFKGH TLARSYIRSL VRRRTTRVDG IFNITTKDGY KLRVMGMVIA YRRIQTSQER AIRKIIQDII YKKAEELNFA D FVLQSVNG ...String:
MARGNPRKRA AAAKDKWKMK EWYIVYAPDF FGSKEIGLTP ADDPEKVIGR VIETTLKDLT GDFTKGHVKL YFQVYDVKGQ NAYTKFKGH TLARSYIRSL VRRRTTRVDG IFNITTKDGY KLRVMGMVIA YRRIQTSQER AIRKIIQDII YKKAEELNFA D FVLQSVNG QIASEIAKEA RKIYPIKRAE VRKIKVLAEP SA

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Macromolecule #5: 30S ribosomal protein S4

MacromoleculeName: 30S ribosomal protein S4 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 21.240621 KDa
SequenceString:
MGDPKRQRKK YETPSHPWIK ERLDRERVLK RNYALKNKKE LWRHETQLKE FRRRARRLLA ARGKQAEIER QQLLQRLYRL GLLPADAVL DDVLSLTVED VLERRLQTIV YRKGLARTMK QARQLIVHGH IEVNGQVIRS PGYLVLREEE DTITYAKGSP F AKEGHPER MVIEQAKQGG EA

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Macromolecule #6: 30S ribosomal protein S4e

MacromoleculeName: 30S ribosomal protein S4e / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 27.820629 KDa
SequenceString: MARKGPKRHL KRLAAPTSWY IHRKAYKWAV RPSPGPHSMK TSIPLIYIVR DYLGYAKTAR EARKILNEGK ILVDGRVRKD YKFPVGIMD VVSIPETGEH YRVLPNRIGK LILHPISEEE AKLKPFRINN KRMVKGAKVQ LNLHDGSNHL VSLAEKDAYK T SYTVIMQV ...String:
MARKGPKRHL KRLAAPTSWY IHRKAYKWAV RPSPGPHSMK TSIPLIYIVR DYLGYAKTAR EARKILNEGK ILVDGRVRKD YKFPVGIMD VVSIPETGEH YRVLPNRIGK LILHPISEEE AKLKPFRINN KRMVKGAKVQ LNLHDGSNHL VSLAEKDAYK T SYTVIMQV PERQIVKVLP FEVGAYVFVT QGKNVARKGK IVEVRQFPMG WPDVVTIEDE NGELFDTLKE YAFVIGKDKP EI SLP

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Macromolecule #7: 30S ribosomal protein S5

MacromoleculeName: 30S ribosomal protein S5 / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 26.372613 KDa
SequenceString: MSDPREIAQR VLEEWEPKTK LGRLVKEGQI TDIHEIFRKG YQIKEPEIVD VLLPEVNLRE NQEVLDIALT VRMTDSGRRI RFRVLAAVG NRDGYVGLGI GHGREVGIAI RKAINYAKMN IIEIKRGCGS WECRCRRPHS IPFAVEGKEG SVRVKLMPGP R GLGLVIGD ...String:
MSDPREIAQR VLEEWEPKTK LGRLVKEGQI TDIHEIFRKG YQIKEPEIVD VLLPEVNLRE NQEVLDIALT VRMTDSGRRI RFRVLAAVG NRDGYVGLGI GHGREVGIAI RKAINYAKMN IIEIKRGCGS WECRCRRPHS IPFAVEGKEG SVRVKLMPGP R GLGLVIGD VGKKILTLAG VQDVWSQTLG ETRTTVNFAK AVFNALYNTN RVAIKPEDIE RYGIVVGRAM PTTFEVE

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Macromolecule #8: 30S ribosomal protein S6e

MacromoleculeName: 30S ribosomal protein S6e / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 13.760986 KDa
SequenceString:
MATFKLVISN PKNGVAKQVE ISGPEADKLI GRRIGEEIPA SELGLNLSEI FGEEIPADAK LKITGGTDKD GFPMRPDVHG PRRVKILLS RGPGFRPRER GERRKKTVHG NTISPNIVQV NMKIVF

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Macromolecule #9: 30S ribosomal protein S7

MacromoleculeName: 30S ribosomal protein S7 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 24.573713 KDa
SequenceString: MAKPLTERFF IPKEVKVMGR WSVEDVTVED PSLKPYINLD ARILPHSHGR YAKKPFGKAN VHIVERLINK VMRSGASHYK AGGHFMRRE HRSIMSKKMK AYEVVKEAFM IIERRTKQNP IQVLVKAIEN SAPREDTTTI AFGGIRYHMS VDVSPLRRLD I ALKNIALG ...String:
MAKPLTERFF IPKEVKVMGR WSVEDVTVED PSLKPYINLD ARILPHSHGR YAKKPFGKAN VHIVERLINK VMRSGASHYK AGGHFMRRE HRSIMSKKMK AYEVVKEAFM IIERRTKQNP IQVLVKAIEN SAPREDTTTI AFGGIRYHMS VDVSPLRRLD I ALKNIALG ASIKCYRNKT TYAQALAEEI IAAANKDPKS FAYSKKEEIE RIAQSSR

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Macromolecule #10: 30S ribosomal protein S8

MacromoleculeName: 30S ribosomal protein S8 / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 14.602109 KDa
SequenceString:
MTLLDPLANA LSHITNSERV GKKEVYIKPA SKLIGEVLRV MLENGYIGEF ELIDDGRAGI YRVQLIGKIN KAGAIKPRFP VKARDYEKW EKRFLPAFEF GILIVSTSQG VMTHKEALEK GIGGRLIAYV Y

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Macromolecule #11: 30S ribosomal protein S8e

MacromoleculeName: 30S ribosomal protein S8e / type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 14.548031 KDa
SequenceString:
MAIWQGRSLK KPSGGRIILA RKKRKRELGR EPANTKVGED REKRKIIRTY GGNRKVRLVE ALYANVFEGG KGKKVKILNV VENPANRQY ARRNIITKGA IIETEIGKAI VTSRPGQDGV VNAVLIKEEN A

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Macromolecule #12: 30S ribosomal protein S9

MacromoleculeName: 30S ribosomal protein S9 / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 15.358943 KDa
SequenceString:
MRVIQTAGKR KTAVARATIR EGKGRVRINH KPVEIIEPEI ARFTIMEPLI LAGEEIVSRV DIDVKVEGGG FMGQAEAARV AIARALVEW TNDMNLKEKF MKYDRTMLVG DSRRTEPHKP NRSTKGPRAK RQKSYR

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Macromolecule #13: 30S ribosomal protein S10

MacromoleculeName: 30S ribosomal protein S10 / type: protein_or_peptide / ID: 13 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 11.716666 KDa
SequenceString:
MQKARIKLAS TNIKALNEVT DQIKQIAERT GVRMSGPIPL PTKRIRITTR KSPDGEGSAT FDRFELRVHK RLVDIEADER AMRQIMRIR VPEDVTIEIE LIS

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Macromolecule #14: 30S ribosomal protein S11

MacromoleculeName: 30S ribosomal protein S11 / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 15.111241 KDa
SequenceString:
MSEEQTTQVN IKKKEKWGVA HIYSSYNNTI IHITDLTGAE TISRWSGGMV VKADRDEPSP YAAMIAARRA AEEAMEKGIT GVHIKVRAP GGSKSKSPGP GAQAAIRALS RAGLRIGRVE DVTPIPHDGT RPKGGRRGRR V

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Macromolecule #15: 30S ribosomal protein S12

MacromoleculeName: 30S ribosomal protein S12 / type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 16.488537 KDa
SequenceString:
MAGKKAPYGE FAGRKLKLKR KKFRWSDIRY KRRVLRLKEK SDPLEGAPQA RGIVLEKIAV EAKQPNSAMR KAVRVQLIKN GKVVTAFTP GDGAINHIDE HDEVIIEGIG GPKGGSMGDI PGIRYKVVKV NRVSLKELVK GRKEKPRR

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Macromolecule #16: 30S ribosomal protein S13

MacromoleculeName: 30S ribosomal protein S13 / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 17.025875 KDa
SequenceString:
MTENFRHIVR VAGVDIDGHK QVRWALTGIK GIGINFATMV LRVAGIDPFM KAGYLTDEQV KKIEEILADP VAHGIPAWAV NRPKDYETG KDMHLITAKL VMAWREDVNR LRRIRAYRGI RHELGLPVRG QRTRSNFRHG TTVGVSRRKK

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Macromolecule #17: 30S ribosomal protein S15

MacromoleculeName: 30S ribosomal protein S15 / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 17.583785 KDa
SequenceString:
MARIHARKRG KSGSKRPPRT APPAWVEYTA EEVEALVVKL RKEGYSTAMI GTILRDQYGI PSVKLITGKK ITKILEENGL APEIPEDLM FLIRRAVNLR KHLEQHPKDK HSRRGLQLIE SKIRRLVKYY RRTGKLPAKW RYDPEQAKLL VR

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Macromolecule #18: 30S ribosomal protein S14 type Z

MacromoleculeName: 30S ribosomal protein S14 type Z / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 6.634088 KDa
SequenceString:
MAKADYNKRK PRKFGKGARR CMRCGQYGPI IRIHGLMLCR HCFREVAPKL GFKKYE

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Macromolecule #19: 30S ribosomal protein S17

MacromoleculeName: 30S ribosomal protein S17 / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 13.219385 KDa
SequenceString:
MREIGLRVQP PAEVCNDPKC PWHGNLKIHG RYVEGIVVSD KGKKTVVVER QYYHYLKKYE RYELRKSKVH AHNPECINAK VGDKVLIAE TRPISKTKSW VVVAVLQRAE RAEEV

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Macromolecule #20: 30S ribosomal protein S17e

MacromoleculeName: 30S ribosomal protein S17e / type: protein_or_peptide / ID: 20 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 8.036431 KDa
SequenceString:
MGNIKQTFIK RTARELFDRY PDKFTRDFEH NKKMVAELTN VTSKTIRNRI AGYITRLVRM KEEGKIL

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Macromolecule #21: 30S ribosomal protein S19

MacromoleculeName: 30S ribosomal protein S19 / type: protein_or_peptide / ID: 21 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 15.453374 KDa
SequenceString:
MARKKEFRYR GYTLDELLNM SLEEFAKLLP SRQRRSLKRG LSPEQKKLLR KIRLAKKGKY NKPIRTHSRD MIVLPEMVGM TIHVYNGKE FVPVEIKEEM IGHYLGEFAM TRKVVQHGSP GVGATRSSMF VAVK

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Macromolecule #22: 30S ribosomal protein S19e

MacromoleculeName: 30S ribosomal protein S19e / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 17.303977 KDa
SequenceString:
MATVYDVPGD LLVERVAKAL KEVPEIKPPE WAPFVKTGRH KERLPEQEDW WYYRVASVFR KVYIDGPVGI ERLRTWYGGR KNRGHAPEH FYKAGGSIIR KALQQLEAAG FVQKVPGEGR IVTPKGQSFL DKIATELKKE LEEQIPELKK Y

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Macromolecule #23: 30S ribosomal protein S24e

MacromoleculeName: 30S ribosomal protein S24e / type: protein_or_peptide / ID: 23 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 11.458116 KDa
SequenceString:
MEIKVTEIRE NKLLGRKEIY FDVLHEGEPT PSREAVKGKL VAMLDLDPNT TVIQYIRSYF GSNVSKGYAK AYETRERMLY IEPEYILVR DGLVQKQEE

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Macromolecule #24: 30S ribosomal protein S27e

MacromoleculeName: 30S ribosomal protein S27e / type: protein_or_peptide / ID: 24 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 7.085514 KDa
SequenceString:
MALPKNLIPM PRSRFLRVKC IDCGNEQIVF SHPATPVRCL VCGATLVEPT GGKGIIKAKV LEVEE

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Macromolecule #25: 30S ribosomal protein S28e

MacromoleculeName: 30S ribosomal protein S28e / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 7.971244 KDa
SequenceString:
MSDEGYPAEV IEIVGRTGVT GGVTQVKVRI LEGRDKGRVI RRNVKGPVRV GDIVILRETE REAREIRRRR

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Macromolecule #26: Predicted zinc-ribbon RNA-binding protein involved in translation

MacromoleculeName: Predicted zinc-ribbon RNA-binding protein involved in translation
type: protein_or_peptide / ID: 26 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 7.001247 KDa
SequenceString:
MFAVEMKFEV PVCTSCGKEI TPREHATHFV CPNCGEAIIW RCESCRVLSV PYKCPKCGWE GP

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Macromolecule #29: 50S ribosomal protein L2

MacromoleculeName: 50S ribosomal protein L2 / type: protein_or_peptide / ID: 29 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 26.092432 KDa
SequenceString: MGKSLIQQRR GKGTTTFRAP SHRYRGAVRY VPLNLVQERT LRGVVEEILH DPGRTAPVAR VKFEDGTKKL IIAPEGVLVG QEIYIGPEA PIAIGNTLPL AKIPEGTYVY DIEGVPGDGG KYVRAGGTYA LVVSREKDKV IVQLPSGELK AFNPMCRATI G VVAGGGRL ...String:
MGKSLIQQRR GKGTTTFRAP SHRYRGAVRY VPLNLVQERT LRGVVEEILH DPGRTAPVAR VKFEDGTKKL IIAPEGVLVG QEIYIGPEA PIAIGNTLPL AKIPEGTYVY DIEGVPGDGG KYVRAGGTYA LVVSREKDKV IVQLPSGELK AFNPMCRATI G VVAGGGRL EKPIVKAGKA YYIAKARNRF WPKPRGVKMN AVNHPHGGKE HHIGRPSTVS RRAPPGRKVG HIAARRTGRR K

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Macromolecule #30: 50S ribosomal protein L3

MacromoleculeName: 50S ribosomal protein L3 / type: protein_or_peptide / ID: 30 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 39.118637 KDa
SequenceString: MGKIHRPRRG SLAYSPRKRA KSIVPRIRSW PKDSEVRMLG FAGYKAGMTH ILMIDDSPGL TKGKEIFVPV TIVEVPPLFV YGIRAYKQG YLGLETATEV WFHDLHKNVA RRIKTLPKNY NEEAFQAKLG QLEDLVNDGE IADVRLLVHT QPWLIGLKKK P EVMEYAIG ...String:
MGKIHRPRRG SLAYSPRKRA KSIVPRIRSW PKDSEVRMLG FAGYKAGMTH ILMIDDSPGL TKGKEIFVPV TIVEVPPLFV YGIRAYKQG YLGLETATEV WFHDLHKNVA RRIKTLPKNY NEEAFQAKLG QLEDLVNDGE IADVRLLVHT QPWLIGLKKK P EVMEYAIG GDDVKAKFDY AKEKIGKELR AGEVLHEGEL LDVIAVTKGK GTQGPVKRWG VKVQFHKAQR AGKGRHIGNL GP WHPARVM WTVPQAGQMG FHHRTEFNKR LIAIGENGKL VLDGNEIEIT PKGGFPHYGI VRSDFLMIEG TIPGSFKRII RVR PAIRPP KKKPPVERPQ ITYVSRESKQ

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Macromolecule #31: 50S ribosomal protein L4

MacromoleculeName: 50S ribosomal protein L4 / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 28.768604 KDa
SequenceString: MKVKVFNLEG EPVEEIELPK VFSTPFRPDL IRRAVIASWT HRIQPQGRDP QAGKRRVTEN IGKGHGMARV ERIKTSPRFA AFVPFAVGG RRTHPPKVEK IIWEDINKKE RRLAIMSAIA ATANYDLVRA RGHVVDNVVQ IPLVVTDDLQ KVFKTAQTRE I FKKLGVWD ...String:
MKVKVFNLEG EPVEEIELPK VFSTPFRPDL IRRAVIASWT HRIQPQGRDP QAGKRRVTEN IGKGHGMARV ERIKTSPRFA AFVPFAVGG RRTHPPKVEK IIWEDINKKE RRLAIMSAIA ATANYDLVRA RGHVVDNVVQ IPLVVTDDLQ KVFKTAQTRE I FKKLGVWD DIERAKKNTK IRAGKGKMRG RRYKKAKGPL IVVAKNEGIV QGARNHPGVD VVTVDNLGVE YLAPGTHPGR LT IWTKGAI ERLREIYG

+
Macromolecule #32: 50S ribosomal protein L5

MacromoleculeName: 50S ribosomal protein L5 / type: protein_or_peptide / ID: 32 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 21.02757 KDa
SequenceString:
MQINREAILA DWEAHPMRKP RIAKVTINIG VGESGERLTK AETMLEQLVG QKPIRRRAKQ TNRDFGIRRG EPIAVKVTLR GEKAYQMLD RLLEAVDRKL KASNFDEHGN FCFGIQEHIN IPGVEYDPEI GIFGMDVCVT LERPGFRVAK RKRQRRKIPT K HKLTKEEG IVFAMEELKA KVEGL

+
Macromolecule #33: 50S ribosomal protein L6

MacromoleculeName: 50S ribosomal protein L6 / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 20.888271 KDa
SequenceString:
MPVDAWIREE IEIPEGVEVT VEGNTVKVKG PKGELQRELK YPGVQIFTED GKVVIYKEFP RKKDVAIVRT FKAHINNMIK GVTEGFKYR LKVVYSHFPM TVKVQGDEVV IENFLGEKNP RRAKILPGVT VKVKGSEIEV EGIDKEAVGQ TAANIEQATR I TKWDRRVF QDGIYIVEKA GKPIKF

+
Macromolecule #34: 50S ribosomal protein L7Ae

MacromoleculeName: 50S ribosomal protein L7Ae / type: protein_or_peptide / ID: 34 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 13.454623 KDa
SequenceString:
MAKPSYVKFE VPQELAEKAL EAVEIARDTG RIRKGTNETT KAVERGQAKL VIIAEDVDPE EIVAHLPPLC EEKEIPYVYV PSKKELGAA AGLEVPAASV AIIEPGKARE LVEDIAMKVK ELMK

+
Macromolecule #35: 50S ribosomal protein L10e

MacromoleculeName: 50S ribosomal protein L10e / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 21.116596 KDa
SequenceString:
MGLRPAKIDR DVDKPAYTRR EYIRGAPGPK ITIFDMGNLS AEFEYEVSLH AEQAMQIRQN ALEAIRIQVN RYLQKNVGRS NYHFKIRVY PFQVLRENPM ATGRKADRYG NGMRRPFGKP IGLAARVRKD QKILTVWVNG QHLKFALGAM HRAKMKLPYS A YYRIYDKE GNDVTTKVLS TMKL

+
Macromolecule #36: 50S ribosomal protein L13

MacromoleculeName: 50S ribosomal protein L13 / type: protein_or_peptide / ID: 36 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 16.316173 KDa
SequenceString:
MRIINAEGLI LGRLASKVAK MLLEGEEVVI VNAEKAIITG NREDIFAKYK QRTELRTRTN PRRGPFYPKR SDEIVRRTVR GMLPWKTDR GRKAFKRLKV YVGVPKEFEG KEFETISEAH MSRLATPKYV TVGEVAKFLG GKF

+
Macromolecule #37: 50S ribosomal protein L14

MacromoleculeName: 50S ribosomal protein L14 / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 15.181888 KDa
SequenceString:
MAKKGAGATR GISPVRPTRA LPIGAYLKVA DNSGAKVIQI IGVVGYKGTR RRLAAAGVGD MVVATVKKGR PDMRHQVVRA VVVRQRKEY RRLDGMRVKF EDNAAAIVTP EGVPRGTEIR GAIAREAAER WVRLGSIASI VL

+
Macromolecule #38: 50S ribosomal protein L14e

MacromoleculeName: 50S ribosomal protein L14e / type: protein_or_peptide / ID: 38 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 8.968527 KDa
SequenceString:
MPAIEVGRIA VVIAGRRAGQ KVVVADIIDK NFVLVTGAGL NKVKRRRMNV KHLEPLPERV NIQRGASDEE IKAALEGAGI SLE

+
Macromolecule #39: 50S ribosomal protein L15

MacromoleculeName: 50S ribosomal protein L15 / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 16.571436 KDa
SequenceString:
MIRRRKKVRK LRGSHTHGWG CKKKHRGGGS KGGRGMAGTG KRKDQKWTWT IKYAPDRLGK RGFHRPKAVQ YIPKVINLND IDENFELFK DAGIIYEEDG KLVFDATALG VDKILGTGKL TRALVVKAYY VTPKAEEKIK AAGGEVLLA

+
Macromolecule #40: 50S ribosomal protein L15e

MacromoleculeName: 50S ribosomal protein L15e / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 22.607863 KDa
SequenceString: MGMYKYIREA WKSPKKSYVG ELLKKRMIQW RRDPVVKRIE RPTRLDRARS LGYQAKQGYV VVRVRVRRGG RKRPRWKGGR KPSKMGMVK YSPKKSLQWI AEEKAARKFP NLEVLNSYWV GEDGMYKWFE VIMVDPHHPV IKSDPKIAWI AGKAHKGRVF R GLTSAGKR ...String:
MGMYKYIREA WKSPKKSYVG ELLKKRMIQW RRDPVVKRIE RPTRLDRARS LGYQAKQGYV VVRVRVRRGG RKRPRWKGGR KPSKMGMVK YSPKKSLQWI AEEKAARKFP NLEVLNSYWV GEDGMYKWFE VIMVDPHHPV IKSDPKIAWI AGKAHKGRVF R GLTSAGKR SRGLLNKGKG AEKVRPSIRA HQGKGK

+
Macromolecule #41: 50S ribosomal protein L18

MacromoleculeName: 50S ribosomal protein L18 / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 22.895449 KDa
SequenceString: MAHGPRYRVP FRRRREGKTN YHKRLKLLKS KKPRLVVRKT LNHHIAQIVV YDPKGDKTLV SAHTMELMRD FGWKGHGGNT PSAYLLGLL IGYKAKQAGI EEAILDIGLH PPTRGSSIFA VLKGAVDAGL NVPHSEEIYP EDYRINGEHI ANYAKALKEE D EALYRKQF ...String:
MAHGPRYRVP FRRRREGKTN YHKRLKLLKS KKPRLVVRKT LNHHIAQIVV YDPKGDKTLV SAHTMELMRD FGWKGHGGNT PSAYLLGLL IGYKAKQAGI EEAILDIGLH PPTRGSSIFA VLKGAVDAGL NVPHSEEIYP EDYRINGEHI ANYAKALKEE D EALYRKQF SGYLVKGLEP EKLPEHFEEV KAKIIEKFEG ARE

+
Macromolecule #42: 50S ribosomal protein L18e

MacromoleculeName: 50S ribosomal protein L18e / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 13.799152 KDa
SequenceString:
MVKRTGPTDI NLRRLIRTLR KKSNEEGVKI WKDIAWRLER PRRQRAEVNI SKINRYTKEG DVVIVPGSVL GAGRLEHKVV VAAWKFSEA ARRKIIEAGG EAISIEELME RNPKGSGVII ME

+
Macromolecule #43: 50S ribosomal protein L19e

MacromoleculeName: 50S ribosomal protein L19e / type: protein_or_peptide / ID: 43 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 17.667176 KDa
SequenceString:
MIMLKTQRRI AAELLKCGEN RIWIDPERIE DVAAAITRED IKRLIHDGVI KKKPIKGQSR ARARAFQEAR KKGRHRGPGS KKGKKTARM GKKEVWMMTI RALRKELRKL KAEGKLDAHT YRRLYIRAKG GQFKNKRQLY MFMQEHGILK E

+
Macromolecule #44: 50S ribosomal protein L18Ae

MacromoleculeName: 50S ribosomal protein L18Ae / type: protein_or_peptide / ID: 44 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 9.227708 KDa
SequenceString:
MEVKVFRVKG TFERLGKKQP FTKEYRALKE EHVRELVYSD IGSKHRVPRT KIWIESIEEI KPEEAEDPVV RRLSLEL

+
Macromolecule #45: 50S ribosomal protein L21e

MacromoleculeName: 50S ribosomal protein L21e / type: protein_or_peptide / ID: 45 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 11.290313 KDa
SequenceString:
MVKKAHSFRR KTRGKLSKHP RRRGLPPLTR FLQEFEVGQK VHIVIEPSYH KGMPDPRFHG RTGTVVGKRG DAYIVQITDG GKVKTFFIH PVHLRPQKG

+
Macromolecule #46: 50S ribosomal protein L22

MacromoleculeName: 50S ribosomal protein L22 / type: protein_or_peptide / ID: 46 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 17.838777 KDa
SequenceString:
MSRGRFSYSF QNFDPERMAR ASGRDLRISP KHSVELLREI RGMMLNDALR YLDDVIAKKR PVPMKRFNDS QGHKPGKGFG PGRYPVKVA KAVKKILLNA KNNAEQKGLD VDRLKIIHAA AHRGPVLRGY IPRAFGRATP FNEQTTHIEI VVEEIRR

+
Macromolecule #47: 50S ribosomal protein L23

MacromoleculeName: 50S ribosomal protein L23 / type: protein_or_peptide / ID: 47 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 9.915769 KDa
SequenceString:
MDPYKVIIRP LVTEKAVSLI ERENKLTFIV DRRATKQDIK RAVEEMFNVK VAKVNTLVTM KGEKKAYVKL KPEYDASEIA ARLGLF

+
Macromolecule #48: 50S ribosomal protein L24

MacromoleculeName: 50S ribosomal protein L24 / type: protein_or_peptide / ID: 48 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 14.225809 KDa
SequenceString:
MKLDMKQPRK QRKFLYNAPL HLRGKIMSAP LSKELREKYG VRNLPIRVGD KVKVMRGDFK GVEGKVVEVD LRRYRIHVEG VTHKKTDGT EVFYPLHPSN VMIVELNLED EKREKIIERR AA

+
Macromolecule #49: 50S ribosomal protein L24e

MacromoleculeName: 50S ribosomal protein L24e / type: protein_or_peptide / ID: 49 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 8.111553 KDa
SequenceString:
MARWNVCSYC GREFEPGTGK MFVRNDGRVL FFCSSKCEKY YFMGRNPRKL KWTKAFQEAR LQRAKRK

+
Macromolecule #50: 50S ribosomal protein L29

MacromoleculeName: 50S ribosomal protein L29 / type: protein_or_peptide / ID: 50 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 7.937539 KDa
SequenceString:
MKPSEIREMS IEEIDKKIRE LRLELAKERG VLTMGASMEN PMVIRNLRRD IARLLTIKRE KLREKR

+
Macromolecule #51: 50S ribosomal protein L30

MacromoleculeName: 50S ribosomal protein L30 / type: protein_or_peptide / ID: 51 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 17.856193 KDa
SequenceString:
MAKLALIRLR SGIRARGEVR DTLAMLRLHR INHLVIVDDT PSYRGMIQKV KDYITWGEID KETLAKLLRK RGRLIGNKPI TDEYVKEKL GMTIEEFAEK VVNGEMKLRD LPNIKPVFRL HPPRGGLKGS KKRSFKEGGA LGYRGEKINE LIERML

+
Macromolecule #52: 50S ribosomal protein L30e

MacromoleculeName: 50S ribosomal protein L30e / type: protein_or_peptide / ID: 52 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 10.97282 KDa
SequenceString:
MVDFAFELRK VQDTGKIVMG AKKSIHLAKV GGAKLIIVAR NARPDIKEDI YYYAKLSGIP VYEFEGTSVE LGTLLGRPHT VSALAVIDP GESKILALAG GKE

+
Macromolecule #53: 50S ribosomal protein L31e

MacromoleculeName: 50S ribosomal protein L31e / type: protein_or_peptide / ID: 53 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 10.354293 KDa
SequenceString:
MPIKPGEEVI FVVPINKIKK RVPRWKRAPR AARFVREWIA RHAKADEVII GTDVNEKIWE RGAEKPPGKL RVKVVVEESE GKRIARVSL A

+
Macromolecule #54: 50S ribosomal protein L32e

MacromoleculeName: 50S ribosomal protein L32e / type: protein_or_peptide / ID: 54 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 14.65448 KDa
SequenceString:
MNEKARLLRI RAKLKRKKPR FLRQEWWRYP KFKNDPKWRR PKGIDSKMRL KKKGKPRSPS IGWSSPKAVR GLHPSGYEEV LVHNVKELE AIDPTRQAAR IAGTVGARKR EMILARAKEL GVKVLN

+
Macromolecule #55: 50S ribosomal protein L34e

MacromoleculeName: 50S ribosomal protein L34e / type: protein_or_peptide / ID: 55 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 10.558783 KDa
SequenceString:
MKPMYRSRSW RRKYVRTPGG RTVIHFERRK PKVAHCAMCG RPLNGVPRGR PSELRKLPKT KKRPERPYPN LCPSCMRKVM KAQVRASIT A

+
Macromolecule #56: Ribosomal protein eL35A

MacromoleculeName: Ribosomal protein eL35A / type: protein_or_peptide / ID: 56 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 11.064885 KDa
SequenceString:
MNGTTPWPEA EGVVVVRKAV VLSYVGSHEH RDPNRVILKP LDVNDRGSAA RLIGRKVVWR TPTGRKLVGK IVRTHGTRGE VKAVFKPGL PGQALGDYVE IL

+
Macromolecule #57: 50S ribosomal protein L37Ae

MacromoleculeName: 50S ribosomal protein L37Ae / type: protein_or_peptide / ID: 57 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 9.24004 KDa
SequenceString:
MGRTTKVGSA GRFGPRYGLK IRRRVAAVEA RMKQKHVCPV CGRKAVRRIS TGIWQCQKCG ATFAGGAYLP TTPAGKVAKR VTASKA

+
Macromolecule #58: 50S ribosomal protein L37e

MacromoleculeName: 50S ribosomal protein L37e / type: protein_or_peptide / ID: 58 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 7.470875 KDa
SequenceString:
MGAGTAPKGK RNRTPTHIRC RRCGRRAFNV KKGYCAACGF GRSRRMRKYS WSHKWRKKRN LSY

+
Macromolecule #59: 50S ribosomal protein L39e

MacromoleculeName: 50S ribosomal protein L39e / type: protein_or_peptide / ID: 59 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 6.262679 KDa
SequenceString:
MARNKPFAKK LRLAKAAKQN RRVPVWVIVK TNRKVITHPK RRHWRRTKLK E

+
Macromolecule #60: 50S ribosomal protein L40e

MacromoleculeName: 50S ribosomal protein L40e / type: protein_or_peptide / ID: 60 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 5.781971 KDa
SequenceString:
MARFPEAEAR IFRKLVCMRC GATNPWGAKK CRKCGYKGLR PKAREPRGGG R

+
Macromolecule #61: LSU ribosomal protein L41E

MacromoleculeName: LSU ribosomal protein L41E / type: protein_or_peptide / ID: 61 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 5.051409 KDa
SequenceString:
MKRRPRKWKK KGRMRWKWIK KRIRRLKRQR RKERGLI

+
Macromolecule #62: 50S ribosomal protein L44e

MacromoleculeName: 50S ribosomal protein L44e / type: protein_or_peptide / ID: 62 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 11.204441 KDa
SequenceString:
MKYPKQIRTY CPFCKRHTIH KVEKVKKRPR SELSAGQRRF RRKLKGYTGF PRPNPAGREK PVKKLDLRFR CTVCGKAHTR GQGFRVKKF ELVEV

+
Macromolecule #63: Nucleic acid-binding protein, containing C2H2 zinc-finger

MacromoleculeName: Nucleic acid-binding protein, containing C2H2 zinc-finger
type: protein_or_peptide / ID: 63 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 5.485575 KDa
SequenceString:
MAVLKAIKIE DRDGEILFRC PRCGMVFRSA KAYTRHVNKA HGHLFRK

+
Macromolecule #64: Predicted exosome subunit, UPF0023 family

MacromoleculeName: Predicted exosome subunit, UPF0023 family / type: protein_or_peptide / ID: 64 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 26.873123 KDa
SequenceString: MPISVDKAVI ARLKTHGETF EILVDPYLAR DFKEGKDVPI EEILATPYVF KDAHKGDKAS EHEMEKIFGT SDPYEVAKII LRKGEVQLT AEQRRQMLED KKRYIATVIH RHAVDPRTGY PHPVDRILRA MEEAGVHIDI FKDAEAQVPQ VIKAIRPILP L KLEVKVIA ...String:
MPISVDKAVI ARLKTHGETF EILVDPYLAR DFKEGKDVPI EEILATPYVF KDAHKGDKAS EHEMEKIFGT SDPYEVAKII LRKGEVQLT AEQRRQMLED KKRYIATVIH RHAVDPRTGY PHPVDRILRA MEEAGVHIDI FKDAEAQVPQ VIKAIRPILP L KLEVKVIA VKIPGDYVGR AYGEVRKFGN IKREEWGSDG SWMFVIEIPG GVEEEFYEKL NALTKGEAIT KLLERKGL

+
Macromolecule #65: Unknown ribosomal protein

MacromoleculeName: Unknown ribosomal protein / type: protein_or_peptide / ID: 65 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 2.434661 KDa
SequenceString:
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAA

+
Macromolecule #66: ZINC ION

MacromoleculeName: ZINC ION / type: ligand / ID: 66 / Number of copies: 14 / Formula: ZN
Molecular weightTheoretical: 65.409 Da

+
Macromolecule #67: water

MacromoleculeName: water / type: ligand / ID: 67 / Number of copies: 3556 / Formula: HOH
Molecular weightTheoretical: 18.015 Da
Chemical component information

ChemComp-HOH:
WATER / Water

-
Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

-
Sample preparation

Concentration0.4 mg/mL
BufferpH: 7.5
GridModel: Quantifoil R2/2 / Material: COPPER / Mesh: 200 / Support film - Material: CARBON / Support film - topology: CONTINUOUS / Support film - Film thickness: 2.0 nm
VitrificationCryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 277.15 K / Instrument: FEI VITROBOT MARK IV

-
Electron microscopy

MicroscopeFEI TITAN KRIOS
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsC2 aperture diameter: 70.0 µm / Calibrated magnification: 29000 / Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELDBright-field microscopy
Image recordingFilm or detector model: FEI FALCON III (4k x 4k) / Detector mode: COUNTING / Average electron dose: 34.0 e/Å2
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

-
Image processing

CTF correctionSoftware - Name: CTFFIND (ver. 4)
Initial angle assignmentType: MAXIMUM LIKELIHOOD
Final angle assignmentType: MAXIMUM LIKELIHOOD
Final reconstructionApplied symmetry - Point group: C1 (asymmetric) / Resolution.type: BY AUTHOR / Resolution: 2.65 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: RELION (ver. 3) / Number images used: 116585

-
Atomic model buiding 1

RefinementProtocol: RIGID BODY FIT
Output model

PDB-6skg:
Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

+
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