6D5K

Structure of Human ATP:Cobalamin Adenosyltransferase bound to ATP, and Adenosylcobalamin

Summary for 6D5K

DescriptorCob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial, 5'-DEOXYADENOSINE, COBALAMIN, ... (8 entities in total)
Functional Keywordsb12, metabolism, adenosyltransferase, transferase
Biological sourceHomo sapiens (Human)
Total number of polymer chains3
Total molecular weight69695.75
Authors
Dodge, G.J.,Campanello, G.,Smith, J.L.,Banerjee, R. (deposition date: 2018-04-19, release date: 2018-10-10, Last modification date: 2018-10-31)
Primary citation
Campanello, G.C.,Ruetz, M.,Dodge, G.J.,Gouda, H.,Gupta, A.,Twahir, U.T.,Killian, M.M.,Watkins, D.,Rosenblatt, D.S.,Brunold, T.C.,Warncke, K.,Smith, J.L.,Banerjee, R.
Sacrificial Cobalt-Carbon Bond Homolysis in Coenzyme B12as a Cofactor Conservation Strategy.
J. Am. Chem. Soc., 140:13205-13208, 2018
PubMed: 30282455 (PDB entries with the same primary citation)
DOI: 10.1021/jacs.8b08659
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.85 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.23970 6.1% 2.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 6d5k
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Molmil generated image of 6d5k
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Molmil generated image of 6d5k
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More Biological unit images

Molmil generated image of 6d5k
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Molmil generated image of 6d5k
rotated about x axis by 90°
Molmil generated image of 6d5k
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (6d5k.pdb1.gz [90.46 KB])
Coordinate files for Biological unit (6d5k.pdb2.gz [177.85 KB])
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