6AUN

calcium-independent phospholipase A2 beta

Summary for 6AUN

• Entry DOI: 10.2210/pdb6aun/pdb
• Descriptor: PLA2G6, iPLA2beta (1 entity in total)
• Functional Keywords: phospholipase, ipla2beta, calcium-independent, pla2g6, pnpla9, calmodulin binding, atp binding, hydrolase
• Biological source: Cricetulus griseus (Chinese hamster)
• Total number of polymer chains: 2
• Total formula weight: 167930.33

Authors

Malley, K.,Koroleva, O.,Miller, I.,Sanishvili, R.,Jenkins, C.M.,Gross, R.W.,Korolev, S. (deposition date: 2017-09-01, release date: 2018-03-07, Last modification date: 2024-03-13)

Primary citation

Malley, K.R.,Koroleva, O.,Miller, I.,Sanishvili, R.,Jenkins, C.M.,Gross, R.W.,Korolev, S.
The structure of iPLA2beta reveals dimeric active sites and suggests mechanisms of regulation and localization.
Nat Commun, 9:765-765, 2018

PubMed Abstract: Calcium-independent phospholipase Aβ (iPLAβ) regulates important physiological processes including inflammation, calcium homeostasis and apoptosis. It is genetically linked to neurodegenerative disorders including Parkinson's disease. Despite its known enzymatic activity, the mechanisms underlying iPLAβ-induced pathologic phenotypes remain poorly understood. Here, we present a crystal structure of iPLAβ that significantly revises existing mechanistic models. The catalytic domains form a tight dimer. They are surrounded by ankyrin repeat domains that adopt an outwardly flared orientation, poised to interact with membrane proteins. The closely integrated active sites are positioned for cooperative activation and internal transacylation. The structure and additional solution studies suggest that both catalytic domains can be bound and allosterically inhibited by a single calmodulin. These features suggest mechanisms of iPLAβ cellular localization and activity regulation, providing a basis for inhibitor development. Furthermore, the structure provides a framework to investigate the role of neurodegenerative mutations and the function of iPLAβ in the brain.

PubMed: 29472584
DOI: 10.1038/s41467-018-03193-0

Experimental method

X-RAY DIFFRACTION (3.951 Å)