6A6J

Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA

Summary for 6A6J

DescriptorZebra fish Y-box protein1 (YB-1), RNA (5'-R(P*CP*AP*UP*(5MC)P*U)-3'), ZINC ION, ... (4 entities in total)
Functional Keywordsob-fold, rna binding protein-rna complex, rna binding protein/rna
Biological sourceDanio rerio (Zebrafish)
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Total number of polymer chains4
Total molecular weight24039.73
Authors
Zhang, M.,Wu, B.,Ma, J.,Huang, Y. (deposition date: 2018-06-28, release date: 2019-06-19, Last modification date: 2019-06-26)
Primary citation
Zhang, M.,Wu, B.,Ma, J.,Huang, Y.
Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA
To be published,
Experimental method
X-RAY DIFFRACTION (2.255 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliersRNA backbone 0.27390 1.4% 3.2% 0.26MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution