6A6J

Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003676	molecular_function	nucleic acid binding
C	0003676	molecular_function	nucleic acid binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue ZN A 201

Chain	Residue
A	GLU97
A	GLU101
B	C2
B	HOH103

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site_id	AC2
Number of Residues	4
Details	binding site for residue ZN C 201

Chain	Residue
C	GLU97
C	GLU101
C	HOH313
D	C2

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Functional Information from PROSITE/UniProt

site_id	PS00352
Number of Residues	20
Details	CSD_1 Cold-shock (CSD) domain signature. YGFInrndtkeDVFvHqTaI

Chain	Residue	Details
A	TYR52-ILE71

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	SITE: Important for C5-methylcytosine-recognition => ECO:0000269|PubMed:31358969

Chain	Residue	Details
A	TRP45
C	TRP45

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site_id	SWS_FT_FI2
Number of Residues	2
Details	MOD_RES: Phosphoserine; by PKB/AKT1 => ECO:0000269|PubMed:15806160, ECO:0007744|PubMed:19690332

Chain	Residue	Details
A	SER82
C	SER82

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site_id	SWS_FT_FI3
Number of Residues	4
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:18851979

Chain	Residue	Details
A	LYS117
C	LYS117

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