6A6J
Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-11-19 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97914 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 62.201, 60.866, 56.513 |
Unit cell angles | 90.00, 118.97, 90.00 |
Refinement procedure
Resolution | 27.210 - 2.255 |
R-factor | 0.2295 |
Rwork | 0.225 |
R-free | 0.27240 |
RMSD bond length | 0.004 |
RMSD bond angle | 1.133 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.330 |
High resolution limit [Å] | 2.250 | 2.250 |
Number of reflections | 7519 | |
<I/σ(I)> | 7.38 | |
Completeness [%] | 94.6 | |
Redundancy | 6.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | 0.05M Zinc acetate, 22% PEG 3350 |