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6A6J

Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U1
Synchrotron siteSSRF
BeamlineBL17U1
Temperature [K]100
Detector technologyCCD
Collection date2017-11-19
DetectorADSC QUANTUM 315r
Wavelength(s)0.97914
Spacegroup nameC 1 2 1
Unit cell lengths62.201, 60.866, 56.513
Unit cell angles90.00, 118.97, 90.00
Refinement procedure
Resolution27.210 - 2.255
R-factor0.2295
Rwork0.225
R-free0.27240
RMSD bond length0.004
RMSD bond angle1.133
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.8.4_1496)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.330
High resolution limit [Å]2.2502.250
Number of reflections7519
<I/σ(I)>7.38
Completeness [%]94.6
Redundancy6.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP291.150.05M Zinc acetate, 22% PEG 3350

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