Crystal structure of wild-type YabJ protein from Bacillus subtilis (natto).

Summary for 5Y6U

DescriptorYabJ protein, ACETIC ACID (3 entities in total)
Functional Keywordshomotrimer, unknown function
Biological sourceBacillus subtilis subsp. natto (strain BEST195)
Total number of polymer chains3
Total molecular weight41363.01
Fujimoto, Z.,Kishine, N.,Kimura, K. (deposition date: 2017-08-15, release date: 2018-08-15)
Primary citation
Hong, L.T.T.,Fujimoto, Z.,Hachiya, T.,Hase, S.,Shiwa, Y.,Yoshikawa, H.,Sakakibara, Y.,Kishine, N.,Thanh, N.S.L.,Suzuki, N.,Kimura, K.
A gain-of-function mutation in yabJ gene enables poly-gamma-glutamic acid production of Bacillus subtilis (natto) in the absence of DegQ by inducing homotetramer formation of YabJ.
To Be Published,
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.185100.3%4.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5y6u
no rotation
Molmil generated image of 5y6u
rotated about x axis by 90°
Molmil generated image of 5y6u
rotated about y axis by 90°
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