5EA5
Crystal Structure of Inhibitor TMC-353121 in Complex with Prefusion RSV F Glycoprotein
Summary for 5EA5
| Entry DOI | 10.2210/pdb5ea5/pdb |
| Related | 4MMU 5EA3 5EA4 5EA6 5EA7 5EA8 |
| Descriptor | Fusion glycoprotein F0, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 2-[[6-[[[2-(3-hydroxypropyl)-5-methylphenyl]amino]methyl]-2-[[3-(4-morpholinyl)propyl]amino]-1H-benzimidazol-1-yl]methyl]-6-methyl-3-pyridinol, ... (5 entities in total) |
| Functional Keywords | class i viral fusion protein, fusion, respiratory syncytial virus, prefusion, viral protein, fusion inhibitor, cell invasion-inhibitor complex, cell invasion/inhibitor |
| Biological source | Human respiratory syncytial virus A (strain A2) |
| Total number of polymer chains | 1 |
| Total formula weight | 64230.50 |
| Authors | Battles, M.B.,McLellan, J.S.,Arnoult, E.,Roymans, D.,Langedijk, J.P. (deposition date: 2015-10-15, release date: 2015-12-09, Last modification date: 2023-09-27) |
| Primary citation | Battles, M.B.,Langedijk, J.P.,Furmanova-Hollenstein, P.,Chaiwatpongsakorn, S.,Costello, H.M.,Kwanten, L.,Vranckx, L.,Vink, P.,Jaensch, S.,Jonckers, T.H.,Koul, A.,Arnoult, E.,Peeples, M.E.,Roymans, D.,McLellan, J.S. Molecular mechanism of respiratory syncytial virus fusion inhibitors. Nat.Chem.Biol., 12:87-93, 2016 Cited by PubMed Abstract: Respiratory syncytial virus (RSV) is a leading cause of pneumonia and bronchiolitis in young children and the elderly. Therapeutic small molecules have been developed that bind the RSV F glycoprotein and inhibit membrane fusion, yet their binding sites and molecular mechanisms of action remain largely unknown. Here we show that these inhibitors bind to a three-fold-symmetric pocket within the central cavity of the metastable prefusion conformation of RSV F. Inhibitor binding stabilizes this conformation by tethering two regions that must undergo a structural rearrangement to facilitate membrane fusion. Inhibitor-escape mutations occur in residues that directly contact the inhibitors or are involved in the conformational rearrangements required to accommodate inhibitor binding. Resistant viruses do not propagate as well as wild-type RSV in vitro, indicating a fitness cost for inhibitor escape. Collectively, these findings provide new insight into class I viral fusion proteins and should facilitate development of optimal RSV fusion inhibitors. PubMed: 26641933DOI: 10.1038/nchembio.1982 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (3.05 Å) |
Structure validation
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