Crystal structure of AAD-1 in complex with (R)-cyhalofop, Mn(II), and 2-oxoglutarate

Summary for 5BKD

Related5BKB 5BK9 5BKE 5BKC
Descriptor(R)-phenoxypropionate/alpha-ketoglutarate-dioxygenase, MANGANESE (II) ION, 2-OXOGLUTARIC ACID, ... (6 entities in total)
Functional Keywordsdioxygenase, herbicide degradation, oxidoreductase
Biological sourceDelftia acidovorans (Pseudomonas acidovorans)
Total number of polymer chains2
Total molecular weight67701.89
Chekan, J.R.,Nair, S.K. (deposition date: 2019-06-02, release date: 2019-06-12, Last modification date: 2019-07-17)
Primary citation
Chekan, J.R.,Ongpipattanakul, C.,Wright, T.R.,Zhang, B.,Bollinger Jr., J.M.,Rajakovich, L.J.,Krebs, C.,Cicchillo, R.M.,Nair, S.K.
Molecular basis for enantioselective herbicide degradation imparted by aryloxyalkanoate dioxygenases in transgenic plants.
Proc.Natl.Acad.Sci.USA, 116:13299-13304, 2019
PubMed: 31209034 (PDB entries with the same primary citation)
DOI: 10.1073/pnas.1900711116
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2173 0.2% 0.4% 1.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-08-12