Crystal structure of AAD-1 in complex with (R)-cyhalofop, Mn(II), and 2-oxoglutarate

Summary for 5BKD

Related5BKB 5BK9 5BKE 5BKC
Descriptor(R)-phenoxypropionate/alpha-ketoglutarate-dioxygenase, MANGANESE (II) ION, 2-OXOGLUTARIC ACID, ... (6 entities in total)
Functional Keywordsdioxygenase, herbicide degradation, oxidoreductase
Biological sourceDelftia acidovorans (Pseudomonas acidovorans)
Total number of polymer chains2
Total molecular weight67701.89
Chekan, J.R.,Nair, S.K. (deposition date: 2019-06-02, release date: 2019-06-12)
Primary citation
Chekan, J.R.,Ongpipattanakul, C.,Wright, T.R.,Zhang, B.,Bollinger, J.M.,Rajakovich, L.J.,Krebs, C.,Cicchillo, R.M.,Nair, S.K.
Molecular Basis for Enantioselective Herbicide Degradation Imparted by Aryloxyalkanoate Dioxygenases (AADs) in Transgenic Plants
Proceedings from the National Academy of Sciences U.S.A.,
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2173 0.2% 0.4% 1.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5bkd
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Molmil generated image of 5bkd
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Molmil generated image of 5bkd
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