4HV7

Structure of ricin A chain bound with N-(N-(pterin-7-yl)carbonylglycyl)glycine

4HV7 の概要

• エントリーDOI: 10.2210/pdb4hv7/pdb
• 関連するPDBエントリー: 1BR6 1IFT 1PX8 1PX9 1RTC 4ESI 4HV3 4huo 4hup
• 分子名称: Ricin, 2-[2-[(2-azanyl-4-oxidanylidene-1H-pteridin-7-yl)carbonylamino]ethanoylamino]ethanoic acid, SULFATE ION, ... (5 entities in total)
• 機能のキーワード: ricin, protein-ligand complex, pterin, hydrolase-hydrolase inhibitor complex, toxin, hydrolase, ribosome-inactivating protein, n-glycosidase, hydrolase/hydrolase inhibitor
• 由来する生物種: Ricinus communis (Castor bean)
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 30458.13

構造登録者

Jasheway, K.R.,Monzingo, A.F.,Saito, R.,Pruet, J.M.,Manzano, L.A.,Wiget, P.A.,Anslyn, E.V.,Robertus, J.D. (登録日: 2012-11-05, 公開日: 2012-12-26, 最終更新日: 2023-09-20)

主引用文献

Saito, R.,Pruet, J.M.,Manzano, L.A.,Jasheway, K.,Monzingo, A.F.,Wiget, P.A.,Kamat, I.,Anslyn, E.V.,Robertus, J.D.
Peptide-conjugated pterins as inhibitors of ricin toxin A.
J.Med.Chem., 56:320-329, 2013

PubMed Abstract: Several 7-peptide-substituted pterins were synthesized and tested as competitive active-site inhibitors of ricin toxin A (RTA). Focus began on dipeptide conjugates, and these results further guided the construction of several tripeptide conjugates. The binding of these compounds to RTA was studied via a luminescence-based kinetic assay, as well as through X-ray crystallography. Despite the relatively polar, solvent exposed active site, several hydrophobic interactions, most commonly π-interactions not predicted by modeling programs, were identified in all of the best-performing inhibitors. Nearly all of these compounds provide IC₅₀ values in the low micromolar range.

PubMed: 23214944
DOI: 10.1021/jm3016393

実験手法

X-RAY DIFFRACTION (1.869 Å)