4KEI

Crystal structure of mouse Ryanodine Receptor 2 (1-217) disease mutant P164S

Summary for 4KEI

• Entry DOI: 10.2210/pdb4kei/pdb
• Related: 3IM5 3IM6 3IM7 3QR5 4KEJ 4KEK
• Descriptor: Ryanodine receptor 2 (2 entities in total)
• Functional Keywords: ca2+ release, ion channel, er/sr membrane, metal transport
• Biological source: Mus musculus (mouse)
• Cellular location: Sarcoplasmic reticulum membrane; Multi-pass membrane protein (Probable): E9Q401
• Total number of polymer chains: 1
• Total formula weight: 24157.16

Authors

Kimlicka, L.,Van Petegem, F. (deposition date: 2013-04-25, release date: 2013-09-04, Last modification date: 2023-09-20)

Primary citation

Amador, F.J.,Kimlicka, L.,Stathopulos, P.B.,Gasmi-Seabrook, G.M.,Maclennan, D.H.,Van Petegem, F.,Ikura, M.
Type 2 Ryanodine Receptor Domain A Contains a Unique and Dynamic alpha-Helix That Transitions to a beta-Strand in a Mutant Linked with a Heritable Cardiomyopathy.
J.Mol.Biol., 425:4034-4046, 2013

PubMed Abstract: Ryanodine receptors (RyRs) are large tetrameric calcium (Ca(2+)) release channels found on the sarcoplasmic reticulum that respond to dihydropyridine receptor activity through a direct conformational interaction and/or indirect Ca(2+) sensitivity, propagating sarcoplasmic reticulum luminal Ca(2+) release in the process of excitation-contraction coupling. There are three human RyR subtypes, and several debilitating diseases are linked to heritable mutations in RyR1 and RyR2 including malignant hypothermia, central core disease, catecholaminergic polymorphic ventricular tachycardia (CPVT) and arrhythmogenic right ventricular dysplasia type 2 (ARVD2). Despite the recent appreciation that many disease-associated mutations within the N-terminal RyRABC domains (i.e., residues 1-559) are located in the putative interfaces mediating tetrameric channel assembly, the precise structural and dynamical consequences of the mutations are not well understood. We used solution nuclear magnetic resonance (NMR) spectroscopy and X-ray crystallography to examine the effect of ARVD2-associated (i.e., R176Q) and CPVT-associated [i.e., P164S, R169Q and delta exon 3 (Δ3)] mutations on the structure and dynamics of RyR2A. Our solution NMR data exposed a mobile α-helix, unique to type 2; further, this α2 helix rescues the β-strand lost in RyR2A Δ3 but remains dynamic in the hot-spot loop (HS-loop) P164S, R169Q and R176Q mutant proteins. Docking of our X-ray crystal/NMR hybrid structure into the RyR1 cryo-electron microscopy map revealed that this RyR2A α2 helix is in close proximity to dense "columns" projecting toward the channel pore. This is in contrast to the HS-loop mutations that cause structural changes largely localized to the intersubunit interface between adjacent ABC domains. Taken together, our data suggest that ARVD2 and CPVT mutations have at least two distinct structural consequences linked to channel dysfunction: perturbation of the HS-loop (i.e., domain A):domain B intersubunit interface and disruption of the communication between the N-terminal region and the channel domain.

PubMed: 23978697
DOI: 10.1016/j.jmb.2013.08.015

Experimental method

X-RAY DIFFRACTION (2.406 Å)