3LJ7

3D-crystal structure of humanized-rat fatty acid amide hydrolase (FAAH) conjugated with Carbamate inhibitor URB597

Summary for 3LJ7

• Entry DOI: 10.2210/pdb3lj7/pdb
• Related: 2vya 2wap 3LJ6
• Descriptor: Fatty-acid amide hydrolase 1, CYCLOHEXANE AMINOCARBOXYLIC ACID, CHLORIDE ION, ... (4 entities in total)
• Functional Keywords: protein-inhibitor complex, faah, fatty acid amide hydrolase, carbamate, inhibitor, covalent, endoplasmic reticulum, golgi apparatus, membrane, transmembrane, hydrolase
• Biological source: Rattus norvegicus (rat)
• Cellular location: Endoplasmic reticulum membrane; Single-pass membrane protein: P97612
• Total number of polymer chains: 2
• Total formula weight: 126580.60

Authors

Mileni, M.,Stevens, R.C.,Kamtekar, S. (deposition date: 2010-01-25, release date: 2010-06-09, Last modification date: 2023-09-06)

Primary citation

Mileni, M.,Kamtekar, S.,Wood, D.C.,Benson, T.E.,Cravatt, B.F.,Stevens, R.C.
Crystal structure of fatty acid amide hydrolase bound to the carbamate inhibitor URB597: discovery of a deacylating water molecule and insight into enzyme inactivation
J.Mol.Biol., 400:743-754, 2010

PubMed Abstract: The endocannabinoid system regulates a wide range of physiological processes including pain, inflammation, and cognitive/emotional states. URB597 is one of the best characterized covalent inhibitors of the endocannabinoid-degrading enzyme fatty acid amide hydrolase (FAAH). Here, we report the structure of the FAAH-URB597 complex at 2.3 A resolution. The structure provides insights into mechanistic details of enzyme inactivation and experimental evidence of a previously uncharacterized active site water molecule that likely is involved in substrate deacylation. This water molecule is part of an extensive hydrogen-bonding network and is coordinated indirectly to residues lining the cytosolic port of the enzyme. In order to corroborate our hypothesis concerning the role of this water molecule in FAAH's catalytic mechanism, we determined the structure of FAAH conjugated to a urea-based inhibitor, PF-3845, to a higher resolution (2.4 A) than previously reported. The higher-resolution structure confirms the presence of the water molecule in a virtually identical location in the active site. Examination of the structures of serine hydrolases that are non-homologous to FAAH, such as elastase, trypsin, or chymotrypsin, shows a similarly positioned hydrolytic water molecule and suggests a functional convergence between the amidase signature enzymes and serine proteases.

PubMed: 20493882
DOI: 10.1016/j.jmb.2010.05.034

Experimental method

X-RAY DIFFRACTION (2.3 Å)