3I6D

Crystal structure of PPO from bacillus subtilis with AF

Summary for 3I6D

Related1SEZ
DescriptorProtoporphyrinogen oxidase, FLAVIN-ADENINE DINUCLEOTIDE, 5-[2-CHLORO-4-(TRIFLUOROMETHYL)PHENOXY]-2-NITROBENZOIC ACID, ... (5 entities in total)
Functional Keywordsprotein-inhibitor complex, fad, flavoprotein, oxidoreductase, porphyrin biosynthesis
Biological sourceBacillus subtilis
Cellular locationCytoplasm P32397
Total number of polymer chains2
Total molecular weight105023.91
Authors
Shen, Y. (deposition date: 2009-07-06, release date: 2009-12-08, Last modification date: 2014-02-19)
Primary citation
Qin, X.,Sun, L.,Wen, X.,Yang, X.,Tan, Y.,Jin, H.,Cao, Q.,Zhou, W.,Xi, Z.,Shen, Y.
Structural insight into unique properties of protoporphyrinogen oxidase from Bacillus subtilis
J.Struct.Biol., 170:76-82, 2010
PubMed: 19944166 (PDB entries with the same primary citation)
DOI: 10.1016/j.jsb.2009.11.012
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.9 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.282312.7%5.5%10.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3i6d
no rotation
Molmil generated image of 3i6d
rotated about x axis by 90°
Molmil generated image of 3i6d
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 3i6d
no rotation
Molmil generated image of 3i6d
rotated about x axis by 90°
Molmil generated image of 3i6d
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (3i6d.pdb1.gz [68.79 KB])
Coordinate files for Biological unit (3i6d.pdb2.gz [69.25 KB])