3AVS

Catalytic fragment of UTX/KDM6A bound with N-oxyalylglycine, and Ni(II)

Summary for 3AVS

Related3AVR
DescriptorLysine-specific demethylase 6A, N-OXALYLGLYCINE, ZINC ION, ... (7 entities in total)
Functional Keywordscupin superfamily, tri/dimethyllysine demethylase, oxidoreductase
Biological sourceHomo sapiens (human)
Cellular locationNucleus (Probable) O15550
Total number of polymer chains1
Total molecular weight61309.08
Authors
Sengoku, T.,Yokoyama, S. (deposition date: 2011-03-07, release date: 2011-10-19, Last modification date: 2011-12-14)
Primary citation
Sengoku, T.,Yokoyama, S.
Structural basis for histone H3 Lys 27 demethylation by UTX/KDM6A
Genes Dev., 25:2266-2277, 2011
PubMed: 22002947 (PDB entries with the same primary citation)
DOI: 10.1101/gad.172296.111
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.85 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.21450 1.9% 4.9%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
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171916
PDB entries from 2020-12-02