2YVP

Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8

Summary for 2YVP

Related2YVM 2YVN 2YVO
DescriptorMutT/nudix family protein, MAGNESIUM ION, METHYLENE ADP-BETA-XYLOSE, ... (4 entities in total)
Functional Keywordsnudix protein, adp-ribose, fad, thermus thermophilus, hydrolase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
Biological sourceThermus thermophilus
Total number of polymer chains1
Total molecular weight20966.7
Authors
Wakamatsu, T.,Nakagawa, N.,Kuramitsu, S.,Yokoyama, S.,Masui, R.,RIKEN Structural Genomics/Proteomics Initiative (RSGI) (deposition date: 2007-04-13, release date: 2008-02-26, Last modification date: 2011-07-13)
Primary citation
Wakamatsu, T.,Nakagawa, N.,Kuramitsu, S.,Masui, R.
Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190:1108-1117, 2008
PubMed: 18039767 (PDB entries with the same primary citation)
DOI: 10.1128/JB.01522-07
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.66 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.185600.6%2.2%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation report