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2YVP

Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005829cellular_componentcytosol
A0006753biological_processnucleoside phosphate metabolic process
A0008768molecular_functionUDP-sugar diphosphatase activity
A0008893molecular_functionguanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity
A0016462molecular_functionpyrophosphatase activity
A0016787molecular_functionhydrolase activity
A0019144molecular_functionADP-sugar diphosphatase activity
A0019693biological_processribose phosphate metabolic process
A0034432molecular_functionbis(5'-adenosyl)-pentaphosphatase activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 183
ChainResidue
AGLU90
AGLU94
AGLU139
AHOH189
AHOH203

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 184
ChainResidue
AHOH193
AALA74
AGLU94
AGLU139
AHOH190

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 185
ChainResidue
AGLU90
AGLU136
AHOH203
AHOH235
AHOH240
AHOH246

site_idAC4
Number of Residues25
DetailsBINDING SITE FOR RESIDUE RBY A 186
ChainResidue
APRO16
ATHR33
ATYR34
AALA43
AARG62
AALA74
AGLY75
ALYS76
AGLU90
AGLU94
AGLN111
ASER113
APHE114
APHE119
AGLU136
AGLU137
AGLY138
AGLU139
AHOH190
AHOH193
AHOH203
AHOH221
AHOH246
AHOH308
AHOH317

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GkvdegEtpeaAArRELrEEvG
ChainResidueDetails
AGLY75-GLY96

218853

PDB entries from 2024-04-24

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