2YVO

Crystal structure of NDX2 in complex with MG2+ and AMP from thermus thermophilus HB8

Summary for 2YVO

Related2YVM 2YVN 2YVP
DescriptorMutT/nudix family protein, MAGNESIUM ION, ADENOSINE MONOPHOSPHATE, ... (4 entities in total)
Functional Keywordsnudix protein, adp-ribose, fad, thermus thermophilus, hydrolase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
Biological sourceThermus thermophilus
Total number of polymer chains1
Total molecular weight20756.58
Authors
Wakamatsu, T.,Nakagawa, N.,Kuramitsu, S.,Yokoyama, S.,Masui, R.,RIKEN Structural Genomics/Proteomics Initiative (RSGI) (deposition date: 2007-04-13, release date: 2008-02-26, Last modification date: 2011-07-13)
Primary citation
Wakamatsu, T.,Nakagawa, N.,Kuramitsu, S.,Masui, R.
Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190:1108-1117, 2008
PubMed: 18039767 (PDB entries with the same primary citation)
DOI: 10.1128/JB.01522-07
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.67 Å)
?

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.18030 1.3% 3.8%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
170383
PDB entries from 2020-10-28