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2YVO

Crystal structure of NDX2 in complex with MG2+ and AMP from thermus thermophilus HB8

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005829cellular_componentcytosol
A0006753biological_processnucleoside phosphate metabolic process
A0016462molecular_functionpyrophosphatase activity
A0016787molecular_functionhydrolase activity
A0019693biological_processribose phosphate metabolic process
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1001
ChainResidue
AGLU90
AGLU94
AGLU139
AHOH2003
AHOH2004

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1002
ChainResidue
AHOH2006
AHOH2009
AALA74
AGLU94
AGLU139
AHOH2002

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1003
ChainResidue
AGLU90
AHOH2004
AHOH2007
AHOH2011
AHOH2027

site_idAC4
Number of Residues24
DetailsBINDING SITE FOR RESIDUE AMP A 2001
ChainResidue
APRO16
ATHR33
ATYR34
AALA74
AGLY75
ALYS76
AGLU90
AGLU94
ASER113
APHE114
AGLU136
AGLU137
AGLY138
AGLU139
AHOH2004
AHOH2006
AHOH2009
AHOH2011
AHOH2015
AHOH2027
AHOH2034
AHOH2058
AHOH2061
AHOH2137

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GkvdegEtpeaAArRELrEEvG
ChainResidueDetails
AGLY75-GLY96

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1mqw
ChainResidueDetails
AARG62
AGLU139

224004

PDB entries from 2024-08-21

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