2QZO

Crystal Structure of the Estrogen Receptor Alpha Ligand Binding Domain Complexed with WAY-169916

Summary for 2QZO

• Entry DOI: 10.2210/pdb2qzo/pdb
• Related: 2QXS
• Descriptor: Estrogen receptor, Nuclear receptor coactivator 2, 4-[1-allyl-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol, ... (5 entities in total)
• Functional Keywords: protein-ligand complex, dna-binding, lipid-binding, metal-binding, nucleus, phosphorylation, receptor, steroid-binding, transcription, transcription regulation, zinc-finger
• Biological source: Homo sapiens (human); More
• Cellular location: Isoform 1: Nucleus . Isoform 3: Nucleus. Nucleus: P03372 P03372; Nucleus : Q8BN74
• Total number of polymer chains: 4
• Total formula weight: 62829.89

Authors

Bruning, J.B.,Gil, G.,Nowak, J.,Katzenellenbogen, J.,Nettles, K.W. (deposition date: 2007-08-16, release date: 2008-08-26, Last modification date: 2024-10-09)

Primary citation

Bruning, J.B.,Parent, A.A.,Gil, G.,Zhao, M.,Nowak, J.,Pace, M.C.,Smith, C.L.,Afonine, P.V.,Adams, P.D.,Katzenellenbogen, J.A.,Nettles, K.W.
Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6:837-843, 2010

PubMed Abstract: Small molecules stabilize specific protein conformations from a larger ensemble, enabling molecular switches that control diverse cellular functions. We show here that the converse also holds true: the conformational state of the estrogen receptor can direct distinct orientations of the bound ligand. 'Gain-of-allostery' mutations that mimic the effects of ligand in driving protein conformation allowed crystallization of the partial agonist ligand WAY-169916 with both the canonical active and inactive conformations of the estrogen receptor. The intermediate transcriptional activity induced by WAY-169916 is associated with the ligand binding differently to the active and inactive conformations of the receptor. Analyses of a series of chemical derivatives demonstrated that altering the ensemble of ligand binding orientations changes signaling output. The coupling of different ligand binding orientations to distinct active and inactive protein conformations defines a new mechanism for titrating allosteric signaling activity.

PubMed: 20924370
DOI: 10.1038/nchembio.451

Experimental method

X-RAY DIFFRACTION (1.72 Å)