2I4D

Crystal structure of WT HIV-1 protease with GS-8373

2I4D の概要

• エントリーDOI: 10.2210/pdb2i4d/pdb
• 関連するPDBエントリー: 2I4U 2I4V 2I4W 2I4X
• 分子名称: Protease, ({4-[(2S,3R)-2-({[(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YLOXY]CARBONYL}AMINO)-3-HYDROXY-4-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}BUTYL]PHENOXY}METHYL)PHOSPHONIC ACID (3 entities in total)
• 機能のキーワード: hiv-1 protease, hydrolase
• 由来する生物種: Human immunodeficiency virus 1
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 22336.30

構造登録者

Hatada, M. (登録日: 2006-08-21, 公開日: 2007-08-21, 最終更新日: 2024-02-21)

主引用文献

Cihlar, T.,He, G.X.,Liu, X.,Chen, J.M.,Hatada, M.,Swaminathan, S.,McDermott, M.J.,Yang, Z.Y.,Mulato, A.S.,Chen, X.,Leavitt, S.A.,Stray, K.M.,Lee, W.A.
Suppression of HIV-1 Protease Inhibitor Resistance by Phosphonate-mediated Solvent Anchoring.
J.Mol.Biol., 363:635-647, 2006

PubMed Abstract: The introduction of human immunodeficiency virus type 1 (HIV-1) protease inhibitors (PIs) markedly improved the clinical outcome and control of HIV-1 infection. However, cross-resistance among PIs due to a wide spectrum of mutations in viral protease is a major factor limiting their broader clinical use. Here we report on the suppression of PI resistance using a covalent attachment of a phosphonic acid motif to a peptidomimetic inhibitor scaffold. The resulting phosphonate analogs maintain high binding affinity to HIV-1 protease, potent antiretroviral activity, and unlike the parent molecules, display no loss of potency against a panel of clinically important PI-resistant HIV-1 strains. As shown by crystallographic analysis, the phosphonate moiety is highly exposed to solvent with no discernable interactions with any of the enzyme active site or surface residues. We term this effect "solvent anchoring" and demonstrate that it is driven by a favorable change in the inhibitor binding entropy upon the interaction with mutant enzymes. This type of thermodynamic behavior, which was not found with the parent scaffold fully buried in the enzyme active site, is a result of the increased degeneracy of inhibitor binding states, allowing effective molecular adaptation to the expanded cavity volume of mutant proteases. This strategy, which is applicable to various PI scaffolds, should facilitate the design of novel PIs and potentially other antiviral therapeutics.

PubMed: 16979654
DOI: 10.1016/j.jmb.2006.07.073

実験手法

X-RAY DIFFRACTION (1.5 Å)