9VDJ
Serial synchrotron crystallography structure of a ba3-type cytochrome c oxidase using a goniometer-compatible chip-based platform
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Cytochrome c oxidase subunit 1 | polymer | 569 | 63540.1 | 1 | UniProt (Q5SJ79) Pfam (PF00115) | Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) | Cytochrome c ba(3) subunit I,Cytochrome c oxidase polypeptide I,Cytochrome cba3 subunit 1 |
| 2 | B (B) | Cytochrome c oxidase subunit 2 | polymer | 168 | 18581.3 | 1 | UniProt (Q5SJ80) Pfam (PF09125) Pfam (PF00116) | Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) | Cytochrome c ba(3) subunit II,Cytochrome c oxidase polypeptide II,Cytochrome cba3 subunit 2 |
| 3 | C (C) | Cytochrome c oxidase polypeptide 2A | polymer | 34 | 3769.6 | 1 | UniProt (P82543) Pfam (PF08113) | Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) | Cytochrome c ba(3) subunit IIA,Cytochrome c oxidase polypeptide IIA,Cytochrome cba3 subunit 2A |
| 4 | D (A) | COPPER (II) ION | non-polymer | 63.5 | 1 | Chemie (CU) PubChem (27099) | |||
| 5 | E (A) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 1 | Chemie (HEM) | |||
| 6 | F (A) | HEME-AS | non-polymer | 921.0 | 1 | Chemie (HAS) | |||
| 7 | G, H, I, J, K... (A, B, C) | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate | non-polymer | 356.5 | 15 | Chemie (OLC) PubChem (25021708) PubChem (46840179) PubChem (54294271) PubChem (54294270) PubChem (5283468) PubChem (5364833) PubChem (33022) PubChem (11451146) PubChem (12178130) | |||
| 8 | S (B) | DINUCLEAR COPPER ION | non-polymer | 127.1 | 1 | Chemie (CUA) | |||
| 9 | W, X, Y (A, B, C) | water | water | 18.0 | 135 | Chemie (HOH) |
Sequence modifications
A: 2 - 562 (UniProt: Q5SJ79)
| PDB | External Database | Details |
|---|---|---|
| Met -6 | - | initiating methionine |
| His -5 | - | expression tag |
| His -4 | - | expression tag |
| His -3 | - | expression tag |
| His -2 | - | expression tag |
| His -1 | - | expression tag |
| His 0 | - | expression tag |
| His 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 85891.0 | |
| Non-Polymers* | Number of molecules | 19 |
| Total formula weight | 7076.2 | |
| All* | Total formula weight | 92967.2 |
