9LP8

Extrinsic-protein reconstituted PSII of Thermosynechococcus vulcanus NIES-2134

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, T (A, a)	Photosystem II protein D1	polymer	360	39732.3	2	UniProt (P51765)	Thermostichus vulcanus NIES-2134	PSII D1 protein,Photosystem II Q(B) protein
2	B, U (B, b)	Photosystem II CP47 reaction center protein	polymer	505	56068.7	2	UniProt (D0VWR1)	Thermostichus vulcanus NIES-2134	PSII 47 kDa protein,Protein CP-47
3	C, V (C, c)	Photosystem II 44 kDa reaction center protein	polymer	473	51666.1	2		Thermostichus vulcanus NIES-2134
4	D, W (D, d)	Photosystem II D2 protein	polymer	342	38419.9	2	UniProt (D0VWR8)	Thermostichus vulcanus NIES-2134	PSII D2 protein,Photosystem Q(A) protein
5	E, X (E, e)	Cytochrome b559 subunit alpha	polymer	84	9580.8	2	UniProt (P12238)	Thermostichus vulcanus NIES-2134	PSII reaction center subunit V
6	F, Y (F, f)	Cytochrome b559 subunit beta	polymer	45	5067.9	2	UniProt (P12239)	Thermostichus vulcanus NIES-2134	PSII reaction center subunit VI
7	G, Z (H, h)	Photosystem II reaction center protein H	polymer	65	7227.6	2	UniProt (P19052)	Thermostichus vulcanus NIES-2134	PSII-H
8	AA, H (I, i)	Photosystem II reaction center protein I	polymer	38	4438.3	2	UniProt (P12240)	Thermostichus vulcanus NIES-2134	PSII-I,PSII 4.4 kDa protein
9	BA, I (J, j)	Photosystem II reaction center protein J	polymer	40	4105.9	2	UniProt (Q7DGD4)	Thermostichus vulcanus NIES-2134	PSII-J
10	CA, J (K, k)	Photosystem II reaction center protein K	polymer	37	4101.9	2	UniProt (P19054)	Thermostichus vulcanus NIES-2134	PSII-K
11	DA, K (L, l)	Photosystem II reaction center protein L	polymer	37	4299.0	2	UniProt (P12241)	Thermostichus vulcanus NIES-2134	PSII-L
12	EA, L (M, m)	Photosystem II reaction center protein M	polymer	36	4009.7	2	UniProt (P12312)	Thermostichus vulcanus NIES-2134	PSII-M
13	FA, M (O, o)	Photosystem II extrinsic protein O	polymer	244	26651.7	2	UniProt (D0VWR2)	Thermostichus vulcanus NIES-2134	PsbO,Photosystem II manganese-stabilizing polypeptide,MSP
14	GA, N (T, t)	Photosystem II reaction center protein T	polymer	32	3906.7	2	UniProt (P12313)	Thermostichus vulcanus NIES-2134	PSII-T
15	HA, O (U, u)	Photosystem II extrinsic protein U	polymer	104	11656.0	2	UniProt (P56152)	Thermostichus vulcanus NIES-2134	PSII-U,PsbU,Photosystem II 12 kDa extrinsic protein,PS II complex 12 kDa extrinsic protein
16	IA, P (V, v)	Photosystem II extrinsic protein V	polymer	163	18046.9	2	UniProt (P0A387)	Thermostichus vulcanus NIES-2134	PsbV,Cytochrome c-550,Cytochrome c550,Low-potential cytochrome c
17	JA, Q (Y, y)	Photosystem II reaction center protein Psb30	polymer	30	3228.0	2	UniProt (D0VWR3)	Thermostichus vulcanus NIES-2134	Photosystem II reaction center protein Ycf12
18	KA, R (X, x)	Photosystem II reaction center protein X	polymer	40	4191.0	2	UniProt (D0VWR4)	Thermostichus vulcanus NIES-2134
19	LA, S (Z, z)	Photosystem II reaction center protein Z	polymer	62	6766.2	2	UniProt (D0VWR5)	Thermostichus vulcanus NIES-2134	PSII-Z
20	MA (R)	Photosystem II reaction center protein Y	polymer	34	3859.7	1	UniProt (P0DM37)	Thermostichus vulcanus NIES-2134
21	NA, OG (A, a)	CA-MN4-O5 CLUSTER	non-polymer		339.8	2	Chemie (OEX)
22	OA, PG (A, a)	FE (II) ION	non-polymer		55.8	2	Chemie (FE2) PubChem (27284)
23	PA, QA, QG, RG (A, a)	CHLORIDE ION	non-polymer		35.5	4	Chemie (CL) PubChem (312)
24	AD, AI, AJ, BD, BJ... (C, b, c, D, d...)	CHLOROPHYLL A	non-polymer		893.5	70	Chemie (CLA)
25	UA, VA, VG, WG (A, a)	PHEOPHYTIN A	non-polymer		871.2	4	Chemie (PHO)
26	AC, BC, BI, CC, CI... (B, b, Y, D, y...)	BETA-CAROTENE	non-polymer		536.9	20	Chemie (BCR) PubChem (5280489) PubChem (86765360) PubChem (173398668)
27	DB, DC, HH, LG, TE... (A, B, b, a, F...)	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL	non-polymer		795.1	8	Chemie (SQD) PubChem (25147486)
28	AH, DE, EC, EI, NE... (a, C, B, b, D...)	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE	non-polymer		787.2	10	Chemie (LMG) PubChem (446441)
29	AB, BH, IE, OK (A, a, D, d)	2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE	non-polymer		749.2	4	Chemie (PL9)
30	AF, BB, BE, BK, CB... (H, A, C, c, I...)	UNKNOWN LIGAND	non-polymer		258.1	55	Chemie (UNL)
31	AE, AK, AM, BL, BM... (C, c, u, f, V...)	GLYCEROL	non-polymer		92.1	55	Chemie (GOL) PubChem (753)
32	HB, SG (A, a)	BICARBONATE ION	non-polymer		61.0	2	Chemie (BCT) PubChem (769)
33	AL, JB, KH, PF, SL... (f, B, b, O, o...)	CALCIUM ION	non-polymer		40.1	7	Chemie (CA) PubChem (271)
34	EE, FC, FI, GF, JG... (D, B, b, J, Z...)	DODECYL-BETA-D-MALTOSIDE	non-polymer		510.6	16	Chemie (LMT) PubChem (114880)
35	BF, BG, GC, GI, GM... (H, V, B, b, v...)	heptyl 1-thio-beta-D-glucopyranoside	non-polymer		294.4	22	Chemie (HTG) PubChem (656917)
36	DL, JE, LD, LJ, MD... (h, D, C, c, e...)	DIGALACTOSYL DIACYL GLYCEROL (DGDG)	non-polymer		949.3	10	Chemie (DGD) PubChem (15991538)
37	KE, KF, LE, ME, PK... (D, L, d, E, b...)	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE	non-polymer		723.0	10	Chemie (LHG)
38	AG, DM, UE, YK (V, v, F, f)	PROTOPORPHYRIN IX CONTAINING FE	non-polymer		616.5	4	Chemie (HEM)
39	CL, YE (h, H)	(3R)-beta,beta-caroten-3-ol	non-polymer		552.9	2	Chemie (RRX) PubChem (5281235)
40	FF, LL (J, j)	MAGNESIUM ION	non-polymer		24.3	2	Chemie (MG) PubChem (888)
41	QF (O)	SULFATE ION	non-polymer		96.1	1	Chemie (SO4)
42	AN, BN, CN, DN, EN... (V, Y, X, a, b...)	water	water		18.0	2750	Chemie (HOH)

Sequence modifications

A, a: 1 - 360 (UniProt: P51765)

PDB	External Database	Details
Pro 279	Arg 279	variant

K, k: 10 - 46 (UniProt: P19054)

PDB	External Database	Details
Leu 33	Phe 24	variant
Trp 39	Val 30	variant

M, m: 1 - 36 (UniProt: P12312)

PDB	External Database	Details
Leu 8	Phe 8	variant

Contents of the asymmetric unit

Polymers	Number of chains	39
	Total formula weight	610189.3
Non-Polymers*	Number of molecules	310
	Total formula weight	149679.2
All*	Total formula weight	759868.5

*Water molecules are not included.