Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9LP8

Extrinsic-protein reconstituted PSII of Thermosynechococcus vulcanus NIES-2134

Functional Information from GO Data

Chain	GOid	namespace	contents
a	0005506	molecular_function	iron ion binding
a	0009055	molecular_function	electron transfer activity
a	0009523	cellular_component	photosystem II
a	0010242	molecular_function	oxygen evolving activity
a	0015979	biological_process	photosynthesis
a	0016168	molecular_function	chlorophyll binding
a	0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
a	0031676	cellular_component	plasma membrane-derived thylakoid membrane
a	0042651	cellular_component	thylakoid membrane
A	0005506	molecular_function	iron ion binding
A	0009055	molecular_function	electron transfer activity
A	0009523	cellular_component	photosystem II
A	0010242	molecular_function	oxygen evolving activity
A	0015979	biological_process	photosynthesis
A	0016168	molecular_function	chlorophyll binding
A	0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
A	0031676	cellular_component	plasma membrane-derived thylakoid membrane
A	0042651	cellular_component	thylakoid membrane
b	0031676	cellular_component	plasma membrane-derived thylakoid membrane
B	0031676	cellular_component	plasma membrane-derived thylakoid membrane
d	0009523	cellular_component	photosystem II
d	0010242	molecular_function	oxygen evolving activity
d	0031676	cellular_component	plasma membrane-derived thylakoid membrane
D	0009523	cellular_component	photosystem II
D	0010242	molecular_function	oxygen evolving activity
D	0031676	cellular_component	plasma membrane-derived thylakoid membrane
e	0005506	molecular_function	iron ion binding
e	0005737	cellular_component	cytoplasm
e	0009055	molecular_function	electron transfer activity
e	0015979	biological_process	photosynthesis
e	0031676	cellular_component	plasma membrane-derived thylakoid membrane
e	0042651	cellular_component	thylakoid membrane
E	0005506	molecular_function	iron ion binding
E	0005737	cellular_component	cytoplasm
E	0009055	molecular_function	electron transfer activity
E	0015979	biological_process	photosynthesis
E	0031676	cellular_component	plasma membrane-derived thylakoid membrane
E	0042651	cellular_component	thylakoid membrane
f	0005506	molecular_function	iron ion binding
f	0005737	cellular_component	cytoplasm
f	0009055	molecular_function	electron transfer activity
f	0015979	biological_process	photosynthesis
f	0031676	cellular_component	plasma membrane-derived thylakoid membrane
f	0042651	cellular_component	thylakoid membrane
F	0005506	molecular_function	iron ion binding
F	0005737	cellular_component	cytoplasm
F	0009055	molecular_function	electron transfer activity
F	0015979	biological_process	photosynthesis
F	0031676	cellular_component	plasma membrane-derived thylakoid membrane
F	0042651	cellular_component	thylakoid membrane
h	0031676	cellular_component	plasma membrane-derived thylakoid membrane
H	0031676	cellular_component	plasma membrane-derived thylakoid membrane
i	0005737	cellular_component	cytoplasm
i	0015979	biological_process	photosynthesis
i	0031676	cellular_component	plasma membrane-derived thylakoid membrane
i	0042651	cellular_component	thylakoid membrane
I	0005737	cellular_component	cytoplasm
I	0015979	biological_process	photosynthesis
I	0031676	cellular_component	plasma membrane-derived thylakoid membrane
I	0042651	cellular_component	thylakoid membrane
j	0005737	cellular_component	cytoplasm
j	0015979	biological_process	photosynthesis
j	0031676	cellular_component	plasma membrane-derived thylakoid membrane
j	0042651	cellular_component	thylakoid membrane
J	0005737	cellular_component	cytoplasm
J	0015979	biological_process	photosynthesis
J	0031676	cellular_component	plasma membrane-derived thylakoid membrane
J	0042651	cellular_component	thylakoid membrane
k	0005737	cellular_component	cytoplasm
k	0031676	cellular_component	plasma membrane-derived thylakoid membrane
K	0005737	cellular_component	cytoplasm
K	0031676	cellular_component	plasma membrane-derived thylakoid membrane
l	0005737	cellular_component	cytoplasm
l	0015979	biological_process	photosynthesis
l	0031676	cellular_component	plasma membrane-derived thylakoid membrane
l	0042651	cellular_component	thylakoid membrane
L	0005737	cellular_component	cytoplasm
L	0015979	biological_process	photosynthesis
L	0031676	cellular_component	plasma membrane-derived thylakoid membrane
L	0042651	cellular_component	thylakoid membrane
m	0005737	cellular_component	cytoplasm
m	0015979	biological_process	photosynthesis
m	0031676	cellular_component	plasma membrane-derived thylakoid membrane
m	0042651	cellular_component	thylakoid membrane
M	0005737	cellular_component	cytoplasm
M	0015979	biological_process	photosynthesis
M	0031676	cellular_component	plasma membrane-derived thylakoid membrane
M	0042651	cellular_component	thylakoid membrane
o	0009579	cellular_component	thylakoid
o	0031676	cellular_component	plasma membrane-derived thylakoid membrane
O	0009579	cellular_component	thylakoid
O	0031676	cellular_component	plasma membrane-derived thylakoid membrane
R	0031676	cellular_component	plasma membrane-derived thylakoid membrane
t	0005737	cellular_component	cytoplasm
t	0015979	biological_process	photosynthesis
t	0031676	cellular_component	plasma membrane-derived thylakoid membrane
t	0042651	cellular_component	thylakoid membrane
T	0005737	cellular_component	cytoplasm
T	0015979	biological_process	photosynthesis
T	0031676	cellular_component	plasma membrane-derived thylakoid membrane
T	0042651	cellular_component	thylakoid membrane
u	0031676	cellular_component	plasma membrane-derived thylakoid membrane
U	0031676	cellular_component	plasma membrane-derived thylakoid membrane
x	0031676	cellular_component	plasma membrane-derived thylakoid membrane
X	0031676	cellular_component	plasma membrane-derived thylakoid membrane
y	0031676	cellular_component	plasma membrane-derived thylakoid membrane
Y	0031676	cellular_component	plasma membrane-derived thylakoid membrane
z	0005737	cellular_component	cytoplasm
z	0015979	biological_process	photosynthesis
z	0031676	cellular_component	plasma membrane-derived thylakoid membrane
z	0042651	cellular_component	thylakoid membrane
Z	0005737	cellular_component	cytoplasm
Z	0015979	biological_process	photosynthesis
Z	0031676	cellular_component	plasma membrane-derived thylakoid membrane
Z	0042651	cellular_component	thylakoid membrane

Functional Information from PROSITE/UniProt

site_id	PS00244
Number of Residues	27
Details	REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagvlggallcAiHGA

Chain	Residue	Details
D	ASN190-ALA216
A	ASN191-SER217

site_id	PS00537
Number of Residues	15
Details	CYTOCHROME_B559 Cytochrome b559 subunits heme-binding site signature. ItSVRYwvIHSITIP

Chain	Residue	Details
E	ILE14-PRO28
F	ILE15-PRO29

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	162
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	1158
Details	Topological domain: {"description":"Lumenal","evidences":[{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	490
Details	Topological domain: {"description":"Cytoplasmic","evidences":[{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	2
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"19433803","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19433803","evidenceCode":"ECO:0000303"}]}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"19433803","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12518057","evidenceCode":"ECO:0000303"},{"source":"PubMed","id":"19433803","evidenceCode":"ECO:0000303"}]}

Chain

Residue

Details

site_id	SWS_FT_FI9
Number of Residues	14
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19433803","evidenceCode":"ECO:0000303"}]}

Chain

Residue

Details

site_id	SWS_FT_FI10
Number of Residues	2
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"19433803","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI12
Number of Residues	2
Details	Site: {"description":"Tyrosine radical intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12518057","evidenceCode":"ECO:0000303"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000303"}]}

Chain

Residue

Details

site_id	SWS_FT_FI13
Number of Residues	2
Details	Site: {"description":"Stabilizes free radical intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI14
Number of Residues	180
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01495","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI15
Number of Residues	26
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI16
Number of Residues	170
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI17
Number of Residues	2
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI18
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI19
Number of Residues	6
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19433803","evidenceCode":"ECO:0000303"}]}

Chain

Residue

Details

site_id	SWS_FT_FI20
Number of Residues	2
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI21
Number of Residues	28
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00642","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI22
Number of Residues	96
Details	Topological domain: {"description":"Lumenal","evidences":[{"source":"HAMAP-Rule","id":"MF_00642","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI23
Number of Residues	2
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00642","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19433803","evidenceCode":"ECO:0000303"}]}

Chain

Residue

Details

site_id	SWS_FT_FI24
Number of Residues	32
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI25
Number of Residues	2
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19433803","evidenceCode":"ECO:0000303"}]}

Chain

Residue

Details

site_id	SWS_FT_FI26
Number of Residues	332
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI27
Number of Residues	4
Details	Binding site: {"description":"covalent","evidences":[{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI28
Number of Residues	4
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"PubMed","id":"21499260","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12518057","evidenceCode":"ECO:0000303"},{"source":"PubMed","id":"19433803","evidenceCode":"ECO:0000303"}]}

Chain

Residue

Details

site_id	SWS_FT_FI29
Number of Residues	4
Details	Topological domain: {"description":"Lumenal","evidences":[{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI30
Number of Residues	16
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"PubMed","id":"23426624","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)