9CAI
High-resolution C. elegans 80S ribosome structure - class 1
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (AA) | Small ribosomal subunit protein uS2 | polymer | 276 | 30735.8 | 1 | UniProt (P46769) Pfam (PF00318) | Caenorhabditis elegans | 40S ribosomal protein SA |
| 2 | B (CA) | Large ribosomal subunit protein uL2 | polymer | 260 | 28267.9 | 1 | UniProt (Q9XVF7) Pfam (PF00181) Pfam (PF03947) | Caenorhabditis elegans | 60S ribosomal protein L8 |
| 3 | C (DA) | tRNA | polymer | 76 | 24533.6 | 1 | GenBank (351064414) | Caenorhabditis elegans | |
| 4 | D (AB) | Small ribosomal subunit protein eS1 | polymer | 257 | 29014.7 | 1 | UniProt (P48154) Pfam (PF01015) | Caenorhabditis elegans | 40S ribosomal protein S3a |
| 5 | E (CB) | Large ribosomal subunit protein uL3 | polymer | 401 | 45759.3 | 1 | UniProt (P50880) Pfam (PF00297) | Caenorhabditis elegans | 60S ribosomal protein L3 |
| 6 | F (AC) | Small ribosomal subunit protein uS5 | polymer | 272 | 29011.5 | 1 | UniProt (P51403) Pfam (PF00333) Pfam (PF03719) | Caenorhabditis elegans | 40S ribosomal protein S2 |
| 7 | G (AD) | Small ribosomal subunit protein uS3 | polymer | 247 | 27356.8 | 1 | UniProt (P48152) Pfam (PF07650) Pfam (PF00189) | Caenorhabditis elegans | 40S ribosomal protein S3 |
| 8 | H (AE) | Small ribosomal subunit protein eS4 | polymer | 259 | 29101.0 | 1 | UniProt (Q9N3X2) Pfam (PF16121) Pfam (PF08071) Pfam (PF00900) | Caenorhabditis elegans | 40S ribosomal protein S4 |
| 9 | I (A7) | 5S rRNA | polymer | 119 | 38254.6 | 1 | GenBank (6842) | Caenorhabditis elegans | |
| 10 | J (A8) | 5.8S rRNA | polymer | 153 | 49250.1 | 1 | GenBank (6830) | Caenorhabditis elegans | |
| 11 | K (B2) | 18S rRNA | polymer | 1754 | 565164.6 | 1 | GenBank (25167357) | Caenorhabditis elegans | |
| 12 | L (A5) | 28S rRNA | polymer | 3510 | 1132082.4 | 1 | GenBank (2112362711) | Caenorhabditis elegans | |
| 13 | M (AR) | Small ribosomal subunit protein eS17 | polymer | 130 | 14966.2 | 1 | UniProt (O01692) Pfam (PF00833) | Caenorhabditis elegans | 40S ribosomal protein S17 |
| 14 | N (AK) | Plectin/S10 N-terminal domain-containing protein | polymer | 149 | 16897.3 | 1 | UniProt (O01869) Pfam (PF03501) | Caenorhabditis elegans | |
| 15 | O (AW) | Ribosomal Protein, Small subunit | polymer | 130 | 14758.4 | 1 | UniProt (O17218) Pfam (PF00410) | Caenorhabditis elegans | |
| 16 | P (AS) | Small ribosomal subunit protein uS13 | polymer | 154 | 17809.8 | 1 | UniProt (O18240) Pfam (PF00416) | Caenorhabditis elegans | 40S ribosomal protein S18 |
| 17 | Q (AT) | Small ribosomal subunit protein eS19 | polymer | 146 | 16355.9 | 1 | UniProt (O18650) Pfam (PF01090) | Caenorhabditis elegans | 40S ribosomal protein S19 |
| 18 | R (Aa) | Small ribosomal subunit protein eS26 | polymer | 117 | 13282.6 | 1 | UniProt (O45499) Pfam (PF01283) | Caenorhabditis elegans | 40S ribosomal protein S26 |
| 19 | S (Af) | Ubiquitin-like protein 1-ribosomal protein eS31 fusion protein | polymer | 163 | 18135.1 | 1 | UniProt (P37165) Pfam (PF00240) Pfam (PF01599) | Caenorhabditis elegans | |
| 20 | T (AO) | Small ribosomal subunit protein uS11 | polymer | 152 | 16278.8 | 1 | UniProt (P48150) Pfam (PF00411) | Caenorhabditis elegans | 40S ribosomal protein S14 |
| 21 | U (AI) | Small ribosomal subunit protein eS8 | polymer | 208 | 23800.4 | 1 | UniProt (P48156) Pfam (PF01201) | Caenorhabditis elegans | 40S ribosomal protein S8 |
| 22 | V (AF) | Small ribosomal subunit protein uS7 | polymer | 210 | 23189.7 | 1 | UniProt (P49041) Pfam (PF00177) | Caenorhabditis elegans | 40S ribosomal protein S5 |
| 23 | W (AM) | Small ribosomal subunit protein eS12 | polymer | 140 | 15092.3 | 1 | UniProt (P49196) Pfam (PF01248) | Caenorhabditis elegans | 40S ribosomal protein S12 |
| 24 | X (AV) | Small ribosomal subunit protein eS21 | polymer | 88 | 9689.0 | 1 | UniProt (P49197) Pfam (PF01249) | Caenorhabditis elegans | 40S ribosomal protein S21 |
| 25 | Y (AN) | Small ribosomal subunit protein uS15 | polymer | 151 | 17354.5 | 1 | UniProt (P51404) Pfam (PF08069) Pfam (PF00312) | Caenorhabditis elegans | 40S ribosomal protein S13 |
| 26 | Z (AZ) | Small ribosomal subunit protein eS25 | polymer | 117 | 12943.4 | 1 | UniProt (P52821) Pfam (PF03297) | Caenorhabditis elegans | 40S ribosomal protein S25 |
| 27 | AA (Ad) | Small ribosomal subunit protein uS14 | polymer | 56 | 6568.7 | 1 | UniProt (P90983) Pfam (PF00253) | Caenorhabditis elegans | 40S ribosomal protein S29 |
| 28 | BA (AY) | Small ribosomal subunit protein eS24 | polymer | 131 | 14908.9 | 1 | UniProt (Q1XFY9) Pfam (PF01282) | Caenorhabditis elegans | 40S ribosomal protein S24 |
| 29 | CA (AU) | Small ribosomal subunit protein uS10 | polymer | 117 | 13258.5 | 1 | UniProt (Q8WQA8) Pfam (PF00338) | Caenorhabditis elegans | 40S ribosomal protein S20 |
| 30 | DA (AG) | Small ribosomal subunit protein eS6 | polymer | 246 | 28201.0 | 1 | UniProt (Q9NEN6) Pfam (PF01092) | Caenorhabditis elegans | 40S ribosomal protein S6 |
| 31 | EA (Ab) | Small ribosomal subunit protein eS27 | polymer | 83 | 9364.1 | 1 | UniProt (Q9TXP0) Pfam (PF01667) | Caenorhabditis elegans | 40S ribosomal protein S27 |
| 32 | FA (AP) | Small ribosomal subunit protein uS19 | polymer | 151 | 17279.6 | 1 | UniProt (Q9XVP0) Pfam (PF00203) | Caenorhabditis elegans | 40S ribosomal protein S15 |
| 33 | GA (Ac) | Small ribosomal subunit protein eS28 | polymer | 65 | 7449.6 | 1 | UniProt (Q95Y04) Pfam (PF01200) | Caenorhabditis elegans | 40S ribosomal protein S28 |
| 34 | HA (Ae) | Ubiquitin-like domain-containing protein | polymer | 130 | 14058.1 | 1 | UniProt (Q18231) Pfam (PF00240) Pfam (PF04758) | Caenorhabditis elegans | |
| 35 | IA (AX) | Small ribosomal subunit protein uS12 | polymer | 143 | 15909.6 | 1 | UniProt (Q19877) Pfam (PF00164) | Caenorhabditis elegans | 40S ribosomal protein S23 |
| 36 | JA (AL) | Small ribosomal subunit protein uS17 | polymer | 155 | 17783.0 | 1 | UniProt (Q20206) Pfam (PF16205) Pfam (PF00366) | Caenorhabditis elegans | 40S ribosomal protein S11 |
| 37 | KA (AJ) | Small ribosomal subunit protein uS4 | polymer | 189 | 22006.9 | 1 | UniProt (Q20228) Pfam (PF00163) Pfam (PF01479) | Caenorhabditis elegans | 40S ribosomal protein S9 |
| 38 | LA (AQ) | Small ribosomal subunit protein uS9 | polymer | 144 | 16348.0 | 1 | UniProt (Q22054) Pfam (PF00380) | Caenorhabditis elegans | 40S ribosomal protein S16 |
| 39 | MA (AH) | Small ribosomal subunit protein eS7 | polymer | 194 | 22101.0 | 1 | UniProt (Q23312) Pfam (PF01251) | Caenorhabditis elegans | 40S ribosomal protein S7 |
| 40 | NA (CF) | Large ribosomal subunit protein uL30 | polymer | 244 | 28185.7 | 1 | UniProt (O01802) Pfam (PF08079) Pfam (PF00327) | Caenorhabditis elegans | 60S ribosomal protein L7 |
| 41 | OA (CS) | Large ribosomal subunit protein eL20 | polymer | 180 | 21001.5 | 1 | UniProt (O44480) Pfam (PF01775) | Caenorhabditis elegans | 60S ribosomal protein L18a |
| 42 | PA (CV) | Large ribosomal subunit protein uL14 | polymer | 140 | 14979.6 | 1 | UniProt (P48158) Pfam (PF00238) | Caenorhabditis elegans | 60S ribosomal protein L23 |
| 43 | QA (CU) | Large ribosomal subunit protein eL22 | polymer | 130 | 14979.4 | 1 | UniProt (P52819) Pfam (PF01776) | Caenorhabditis elegans | 60S ribosomal protein L22 |
| 44 | RA (CL) | Large ribosomal subunit protein eL13 | polymer | 207 | 23809.7 | 1 | UniProt (P91128) Pfam (PF01294) | Caenorhabditis elegans | 60S ribosomal protein L13 |
| 45 | SA (CG) | Large ribosomal subunit protein eL8 | polymer | 265 | 30240.5 | 1 | UniProt (Q966C6) Pfam (PF01248) | Caenorhabditis elegans | 60S ribosomal protein L7a |
| 46 | TA (CI) | Large ribosomal subunit protein uL16 | polymer | 214 | 24801.0 | 1 | UniProt (Q09533) Pfam (PF00252) | Caenorhabditis elegans | 60S ribosomal protein L10,QM protein homolog |
| 47 | UA (CO) | Large ribosomal subunit protein uL13 | polymer | 202 | 23044.3 | 1 | UniProt (Q27389) Pfam (PF00572) | Caenorhabditis elegans | 60S ribosomal protein L13a |
| 48 | VA (CC) | Large ribosomal subunit protein uL4 | polymer | 345 | 38735.2 | 1 | UniProt (O02056) Pfam (PF00573) Pfam (PF14374) | Caenorhabditis elegans | 60S ribosomal protein L4 |
| 49 | WA (Ch) | Large ribosomal subunit protein uL29 | polymer | 123 | 14233.0 | 1 | UniProt (P34662) Pfam (PF00831) | Caenorhabditis elegans | 60S ribosomal protein L35 |
| 50 | XA (CE) | Large ribosomal subunit protein eL6 | polymer | 217 | 24364.8 | 1 | UniProt (P47991) Pfam (PF01159) | Caenorhabditis elegans | 60S ribosomal protein L6 |
| 51 | YA (Co) | Large ribosomal subunit protein eL42 | polymer | 105 | 12403.8 | 1 | UniProt (P48166) Pfam (PF00935) | Caenorhabditis elegans | 60S ribosomal protein L44,L41,Ribosomal protein rpl-36.A |
| 52 | ZA (Cf) | Large ribosomal subunit protein eL33 | polymer | 124 | 13797.1 | 1 | UniProt (P49180) Pfam (PF01247) | Caenorhabditis elegans | 60S ribosomal protein L35a |
| 53 | AB (Ci) | Large ribosomal subunit protein eL36 | polymer | 104 | 11916.2 | 1 | UniProt (P49181) Pfam (PF01158) | Caenorhabditis elegans | 60S ribosomal protein L36 |
| 54 | BB (Cl) | Large ribosomal subunit protein eL39 | polymer | 51 | 6347.8 | 1 | UniProt (P52814) Pfam (PF00832) | Caenorhabditis elegans | 60S ribosomal protein L39 |
| 55 | CB (CN) | Large ribosomal subunit protein eL15 | polymer | 204 | 24187.2 | 1 | UniProt (P91374) Pfam (PF00827) | Caenorhabditis elegans | 60S ribosomal protein L15 |
| 56 | DB (Ca) | Large ribosomal subunit protein uL15 | polymer | 145 | 16245.0 | 1 | UniProt (Q9BKU5) Pfam (PF00828) | Caenorhabditis elegans | 60S ribosomal protein L27a |
| 57 | EB (Cp) | Large ribosomal subunit protein eL43 | polymer | 91 | 10126.1 | 1 | UniProt (Q9U2A8) Pfam (PF01780) | Caenorhabditis elegans | 60S ribosomal protein L37a |
| 58 | FB (CM) | Large ribosomal subunit protein eL14 | polymer | 135 | 15384.3 | 1 | UniProt (Q9XVE9) Pfam (PF01929) | Caenorhabditis elegans | 60S ribosomal protein L14 |
| 59 | GB (Cc) | Large ribosomal subunit protein eL30 | polymer | 115 | 12453.5 | 1 | UniProt (Q9XWS4) Pfam (PF01248) | Caenorhabditis elegans | 60S ribosomal protein L30 |
| 60 | HB (CH) | Large ribosomal subunit protein uL6 | polymer | 189 | 21545.1 | 1 | UniProt (Q95Y90) Pfam (PF00347) | Caenorhabditis elegans | 60S ribosomal protein L9 |
| 61 | IB (CY) | Large ribosomal subunit protein uL24 | polymer | 142 | 16117.9 | 1 | UniProt (Q19869) Pfam (PF16906) Pfam (PF00467) | Caenorhabditis elegans | 60S ribosomal protein L26 |
| 62 | JB (CR) | Large ribosomal subunit protein eL19 | polymer | 198 | 23715.8 | 1 | UniProt (O02639) Pfam (PF01280) | Caenorhabditis elegans | 60S ribosomal protein L19 |
| 63 | KB (Cb) | 60S ribosomal protein L29 | polymer | 62 | 7249.5 | 1 | UniProt (O45226) Pfam (PF01779) | Caenorhabditis elegans | |
| 64 | LB (CQ) | Large ribosomal subunit protein eL18 | polymer | 188 | 21042.4 | 1 | UniProt (O45946) Pfam (PF17135) | Caenorhabditis elegans | 60S ribosomal protein L18 |
| 65 | MB (CT) | Large ribosomal subunit protein eL21 | polymer | 161 | 18349.4 | 1 | UniProt (P34334) Pfam (PF01157) | Caenorhabditis elegans | 60S ribosomal protein L21 |
| 66 | NB (CD) | Large ribosomal subunit protein uL18 | polymer | 293 | 33451.2 | 1 | UniProt (P49405) Pfam (PF17144) Pfam (PF14204) | Caenorhabditis elegans | 60S ribosomal protein L5 |
| 67 | OB (CZ) | Large ribosomal subunit protein eL27 | polymer | 136 | 15765.9 | 1 | UniProt (P91914) Pfam (PF00467) Pfam (PF01777) | Caenorhabditis elegans | 60S ribosomal protein L27 |
| 68 | PB (CP) | Large ribosomal subunit protein uL22 | polymer | 187 | 21560.8 | 1 | UniProt (Q9BL19) Pfam (PF00237) | Caenorhabditis elegans | 60S ribosomal protein L17 |
| 69 | QB (Cn) | eL41 | polymer | 22 | 3012.9 | 1 | Caenorhabditis elegans | ||
| 70 | RB (Cg) | Large ribosomal subunit protein eL34 | polymer | 110 | 12712.1 | 1 | UniProt (A3QMC5) Pfam (PF01199) | Caenorhabditis elegans | 60S ribosomal protein L34 |
| 71 | SB (Ck) | Large ribosomal subunit protein eL38 | polymer | 70 | 8096.7 | 1 | UniProt (O17570) Pfam (PF01781) | Caenorhabditis elegans | 60S ribosomal protein L38 |
| 72 | TB (Cm) | Ubiquitin-ribosomal protein eL40 fusion protein | polymer | 128 | 14680.2 | 1 | UniProt (P49632) Pfam (PF00240) Pfam (PF01020) | Caenorhabditis elegans | CEP52 |
| 73 | UB (Cd) | Large ribosomal subunit protein eL31 | polymer | 122 | 14291.5 | 1 | UniProt (Q9U332) Pfam (PF01198) | Caenorhabditis elegans | 60S ribosomal protein L31 |
| 74 | VB (Ce) | Large ribosomal subunit protein eL32 | polymer | 134 | 15554.3 | 1 | UniProt (Q22716) Pfam (PF01655) | Caenorhabditis elegans | 60S ribosomal protein L32 |
| 75 | WB (CW) | Large ribosomal subunit protein eL24 | polymer | 159 | 17825.9 | 1 | UniProt (O01868) Pfam (PF01246) | Caenorhabditis elegans | 60S ribosomal protein L24 |
| 76 | XB (Cj) | Ribosomal protein L37 | polymer | 92 | 10536.2 | 1 | UniProt (O62388) Pfam (PF01907) | Caenorhabditis elegans | |
| 77 | YB (CJ) | Large ribosomal subunit protein uL5B | polymer | 196 | 22823.6 | 1 | UniProt (Q19162) Pfam (PF00281) Pfam (PF00673) | Caenorhabditis elegans | 60S ribosomal protein L11-2 |
| 78 | ZB (CX) | Large ribosomal subunit protein uL23B | polymer | 146 | 16320.1 | 1 | UniProt (Q20647) Pfam (PF03939) Pfam (PF00276) | Caenorhabditis elegans | 60S ribosomal protein L23a 2 |
| 79 | AC (DC) | mRNA | polymer | 10 | 3016.7 | 1 | Caenorhabditis elegans | ||
| 80 | BC (A5) | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) | |||
| 81 | CC (A5) | 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione | non-polymer | 281.3 | 1 | Chemie (3HE) |
Sequence modifications
DA: 1 - 76 (GenBank: 351064414)
| PDB | External Database | Details |
|---|---|---|
| C 74 | U 511 | conflict |
| C 75 | G 512 | conflict |
| A 76 | U 513 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 79 |
| Total formula weight | 3163226.5 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 426.6 | |
| All* | Total formula weight | 3163653.1 |
