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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9CAI

High-resolution C. elegans 80S ribosome structure - class 1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AASmall ribosomal subunit protein uS2polymer27630735.81UniProt (P46769)
Pfam (PF00318)
In PDB		Caenorhabditis elegans40S ribosomal protein SA
2CALarge ribosomal subunit protein uL2polymer26028267.91UniProt (Q9XVF7)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Caenorhabditis elegans60S ribosomal protein L8
3DAtRNApolymer7624533.61GenBank (351064414)Caenorhabditis elegans
4ABSmall ribosomal subunit protein eS1polymer25729014.71UniProt (P48154)
Pfam (PF01015)
In PDB		Caenorhabditis elegans40S ribosomal protein S3a
5CBLarge ribosomal subunit protein uL3polymer40145759.31UniProt (P50880)
Pfam (PF00297)
In PDB		Caenorhabditis elegans60S ribosomal protein L3
6ACSmall ribosomal subunit protein uS5polymer27229011.51UniProt (P51403)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Caenorhabditis elegans40S ribosomal protein S2
7ADSmall ribosomal subunit protein uS3polymer24727356.81UniProt (P48152)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Caenorhabditis elegans40S ribosomal protein S3
8AESmall ribosomal subunit protein eS4polymer25929101.01UniProt (Q9N3X2)
Pfam (PF16121)
Pfam (PF08071)
Pfam (PF00900)
In PDB		Caenorhabditis elegans40S ribosomal protein S4
9A75S rRNApolymer11938254.61GenBank (6842)Caenorhabditis elegans
10A85.8S rRNApolymer15349250.11GenBank (6830)Caenorhabditis elegans
11B218S rRNApolymer1754565164.61GenBank (25167357)Caenorhabditis elegans
12A528S rRNApolymer35101132082.41GenBank (2112362711)Caenorhabditis elegans
13ARSmall ribosomal subunit protein eS17polymer13014966.21UniProt (O01692)
Pfam (PF00833)
In PDB		Caenorhabditis elegans40S ribosomal protein S17
14AKPlectin/S10 N-terminal domain-containing proteinpolymer14916897.31UniProt (O01869)
Pfam (PF03501)
In PDB		Caenorhabditis elegans
15AWRibosomal Protein, Small subunitpolymer13014758.41UniProt (O17218)
Pfam (PF00410)
In PDB		Caenorhabditis elegans
16ASSmall ribosomal subunit protein uS13polymer15417809.81UniProt (O18240)
Pfam (PF00416)
In PDB		Caenorhabditis elegans40S ribosomal protein S18
17ATSmall ribosomal subunit protein eS19polymer14616355.91UniProt (O18650)
Pfam (PF01090)
In PDB		Caenorhabditis elegans40S ribosomal protein S19
18AaSmall ribosomal subunit protein eS26polymer11713282.61UniProt (O45499)
Pfam (PF01283)
In PDB		Caenorhabditis elegans40S ribosomal protein S26
19AfUbiquitin-like protein 1-ribosomal protein eS31 fusion proteinpolymer16318135.11UniProt (P37165)
Pfam (PF00240)
Pfam (PF01599)
In PDB		Caenorhabditis elegans
20AOSmall ribosomal subunit protein uS11polymer15216278.81UniProt (P48150)
Pfam (PF00411)
In PDB		Caenorhabditis elegans40S ribosomal protein S14
21AISmall ribosomal subunit protein eS8polymer20823800.41UniProt (P48156)
Pfam (PF01201)
In PDB		Caenorhabditis elegans40S ribosomal protein S8
22AFSmall ribosomal subunit protein uS7polymer21023189.71UniProt (P49041)
Pfam (PF00177)
In PDB		Caenorhabditis elegans40S ribosomal protein S5
23AMSmall ribosomal subunit protein eS12polymer14015092.31UniProt (P49196)
Pfam (PF01248)
In PDB		Caenorhabditis elegans40S ribosomal protein S12
24AVSmall ribosomal subunit protein eS21polymer889689.01UniProt (P49197)
Pfam (PF01249)
In PDB		Caenorhabditis elegans40S ribosomal protein S21
25ANSmall ribosomal subunit protein uS15polymer15117354.51UniProt (P51404)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Caenorhabditis elegans40S ribosomal protein S13
26AZSmall ribosomal subunit protein eS25polymer11712943.41UniProt (P52821)
Pfam (PF03297)
In PDB		Caenorhabditis elegans40S ribosomal protein S25
27AdSmall ribosomal subunit protein uS14polymer566568.71UniProt (P90983)
Pfam (PF00253)
In PDB		Caenorhabditis elegans40S ribosomal protein S29
28AYSmall ribosomal subunit protein eS24polymer13114908.91UniProt (Q1XFY9)
Pfam (PF01282)
In PDB		Caenorhabditis elegans40S ribosomal protein S24
29AUSmall ribosomal subunit protein uS10polymer11713258.51UniProt (Q8WQA8)
Pfam (PF00338)
In PDB		Caenorhabditis elegans40S ribosomal protein S20
30AGSmall ribosomal subunit protein eS6polymer24628201.01UniProt (Q9NEN6)
Pfam (PF01092)
In PDB		Caenorhabditis elegans40S ribosomal protein S6
31AbSmall ribosomal subunit protein eS27polymer839364.11UniProt (Q9TXP0)
Pfam (PF01667)
In PDB		Caenorhabditis elegans40S ribosomal protein S27
32APSmall ribosomal subunit protein uS19polymer15117279.61UniProt (Q9XVP0)
Pfam (PF00203)
In PDB		Caenorhabditis elegans40S ribosomal protein S15
33AcSmall ribosomal subunit protein eS28polymer657449.61UniProt (Q95Y04)
Pfam (PF01200)
In PDB		Caenorhabditis elegans40S ribosomal protein S28
34AeUbiquitin-like domain-containing proteinpolymer13014058.11UniProt (Q18231)
Pfam (PF00240)
Pfam (PF04758)
In PDB		Caenorhabditis elegans
35AXSmall ribosomal subunit protein uS12polymer14315909.61UniProt (Q19877)
Pfam (PF00164)
In PDB		Caenorhabditis elegans40S ribosomal protein S23
36ALSmall ribosomal subunit protein uS17polymer15517783.01UniProt (Q20206)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Caenorhabditis elegans40S ribosomal protein S11
37AJSmall ribosomal subunit protein uS4polymer18922006.91UniProt (Q20228)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Caenorhabditis elegans40S ribosomal protein S9
38AQSmall ribosomal subunit protein uS9polymer14416348.01UniProt (Q22054)
Pfam (PF00380)
In PDB		Caenorhabditis elegans40S ribosomal protein S16
39AHSmall ribosomal subunit protein eS7polymer19422101.01UniProt (Q23312)
Pfam (PF01251)
In PDB		Caenorhabditis elegans40S ribosomal protein S7
40CFLarge ribosomal subunit protein uL30polymer24428185.71UniProt (O01802)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Caenorhabditis elegans60S ribosomal protein L7
41CSLarge ribosomal subunit protein eL20polymer18021001.51UniProt (O44480)
Pfam (PF01775)
In PDB		Caenorhabditis elegans60S ribosomal protein L18a
42CVLarge ribosomal subunit protein uL14polymer14014979.61UniProt (P48158)
Pfam (PF00238)
In PDB		Caenorhabditis elegans60S ribosomal protein L23
43CULarge ribosomal subunit protein eL22polymer13014979.41UniProt (P52819)
Pfam (PF01776)
In PDB		Caenorhabditis elegans60S ribosomal protein L22
44CLLarge ribosomal subunit protein eL13polymer20723809.71UniProt (P91128)
Pfam (PF01294)
In PDB		Caenorhabditis elegans60S ribosomal protein L13
45CGLarge ribosomal subunit protein eL8polymer26530240.51UniProt (Q966C6)
Pfam (PF01248)
In PDB		Caenorhabditis elegans60S ribosomal protein L7a
46CILarge ribosomal subunit protein uL16polymer21424801.01UniProt (Q09533)
Pfam (PF00252)
In PDB		Caenorhabditis elegans60S ribosomal protein L10,QM protein homolog
47COLarge ribosomal subunit protein uL13polymer20223044.31UniProt (Q27389)
Pfam (PF00572)
In PDB		Caenorhabditis elegans60S ribosomal protein L13a
48CCLarge ribosomal subunit protein uL4polymer34538735.21UniProt (O02056)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Caenorhabditis elegans60S ribosomal protein L4
49ChLarge ribosomal subunit protein uL29polymer12314233.01UniProt (P34662)
Pfam (PF00831)
In PDB		Caenorhabditis elegans60S ribosomal protein L35
50CELarge ribosomal subunit protein eL6polymer21724364.81UniProt (P47991)
Pfam (PF01159)
In PDB		Caenorhabditis elegans60S ribosomal protein L6
51CoLarge ribosomal subunit protein eL42polymer10512403.81UniProt (P48166)
Pfam (PF00935)
In PDB		Caenorhabditis elegans60S ribosomal protein L44,L41,Ribosomal protein rpl-36.A
52CfLarge ribosomal subunit protein eL33polymer12413797.11UniProt (P49180)
Pfam (PF01247)
In PDB		Caenorhabditis elegans60S ribosomal protein L35a
53CiLarge ribosomal subunit protein eL36polymer10411916.21UniProt (P49181)
Pfam (PF01158)
In PDB		Caenorhabditis elegans60S ribosomal protein L36
54ClLarge ribosomal subunit protein eL39polymer516347.81UniProt (P52814)
Pfam (PF00832)
In PDB		Caenorhabditis elegans60S ribosomal protein L39
55CNLarge ribosomal subunit protein eL15polymer20424187.21UniProt (P91374)
Pfam (PF00827)
In PDB		Caenorhabditis elegans60S ribosomal protein L15
56CaLarge ribosomal subunit protein uL15polymer14516245.01UniProt (Q9BKU5)
Pfam (PF00828)
In PDB		Caenorhabditis elegans60S ribosomal protein L27a
57CpLarge ribosomal subunit protein eL43polymer9110126.11UniProt (Q9U2A8)
Pfam (PF01780)
In PDB		Caenorhabditis elegans60S ribosomal protein L37a
58CMLarge ribosomal subunit protein eL14polymer13515384.31UniProt (Q9XVE9)
Pfam (PF01929)
In PDB		Caenorhabditis elegans60S ribosomal protein L14
59CcLarge ribosomal subunit protein eL30polymer11512453.51UniProt (Q9XWS4)
Pfam (PF01248)
In PDB		Caenorhabditis elegans60S ribosomal protein L30
60CHLarge ribosomal subunit protein uL6polymer18921545.11UniProt (Q95Y90)
Pfam (PF00347)
In PDB		Caenorhabditis elegans60S ribosomal protein L9
61CYLarge ribosomal subunit protein uL24polymer14216117.91UniProt (Q19869)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Caenorhabditis elegans60S ribosomal protein L26
62CRLarge ribosomal subunit protein eL19polymer19823715.81UniProt (O02639)
Pfam (PF01280)
In PDB		Caenorhabditis elegans60S ribosomal protein L19
63Cb60S ribosomal protein L29polymer627249.51UniProt (O45226)
Pfam (PF01779)
In PDB		Caenorhabditis elegans
64CQLarge ribosomal subunit protein eL18polymer18821042.41UniProt (O45946)
Pfam (PF17135)
In PDB		Caenorhabditis elegans60S ribosomal protein L18
65CTLarge ribosomal subunit protein eL21polymer16118349.41UniProt (P34334)
Pfam (PF01157)
In PDB		Caenorhabditis elegans60S ribosomal protein L21
66CDLarge ribosomal subunit protein uL18polymer29333451.21UniProt (P49405)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Caenorhabditis elegans60S ribosomal protein L5
67CZLarge ribosomal subunit protein eL27polymer13615765.91UniProt (P91914)
Pfam (PF00467)
Pfam (PF01777)
In PDB		Caenorhabditis elegans60S ribosomal protein L27
68CPLarge ribosomal subunit protein uL22polymer18721560.81UniProt (Q9BL19)
Pfam (PF00237)
In PDB		Caenorhabditis elegans60S ribosomal protein L17
69CneL41polymer223012.91Caenorhabditis elegans
70CgLarge ribosomal subunit protein eL34polymer11012712.11UniProt (A3QMC5)
Pfam (PF01199)
In PDB		Caenorhabditis elegans60S ribosomal protein L34
71CkLarge ribosomal subunit protein eL38polymer708096.71UniProt (O17570)
Pfam (PF01781)
In PDB		Caenorhabditis elegans60S ribosomal protein L38
72CmUbiquitin-ribosomal protein eL40 fusion proteinpolymer12814680.21UniProt (P49632)
Pfam (PF00240)
Pfam (PF01020)
In PDB		Caenorhabditis elegansCEP52
73CdLarge ribosomal subunit protein eL31polymer12214291.51UniProt (Q9U332)
Pfam (PF01198)
In PDB		Caenorhabditis elegans60S ribosomal protein L31
74CeLarge ribosomal subunit protein eL32polymer13415554.31UniProt (Q22716)
Pfam (PF01655)
In PDB		Caenorhabditis elegans60S ribosomal protein L32
75CWLarge ribosomal subunit protein eL24polymer15917825.91UniProt (O01868)
Pfam (PF01246)
In PDB		Caenorhabditis elegans60S ribosomal protein L24
76CjRibosomal protein L37polymer9210536.21UniProt (O62388)
Pfam (PF01907)
In PDB		Caenorhabditis elegans
77CJLarge ribosomal subunit protein uL5Bpolymer19622823.61UniProt (Q19162)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Caenorhabditis elegans60S ribosomal protein L11-2
78CXLarge ribosomal subunit protein uL23Bpolymer14616320.11UniProt (Q20647)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Caenorhabditis elegans60S ribosomal protein L23a 2
79DCmRNApolymer103016.71Caenorhabditis elegans
80A5SPERMIDINEnon-polymer145.21Chemie (SPD)
81A54-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dionenon-polymer281.31Chemie (3HE)
Sequence modifications
DA: 1 - 76 (GenBank: 351064414)
PDBExternal DatabaseDetails
C 74U 511conflict
C 75G 512conflict
A 76U 513conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains79
Total formula weight3163226.5
Non-Polymers*Number of molecules2
Total formula weight426.6
All*Total formula weight3163653.1
*Water molecules are not included.

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PDB entries from 2024-10-09

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