9CAI
High-resolution C. elegans 80S ribosome structure - class 1
This is a non-PDB format compatible entry.
Functional Information from PROSITE/UniProt
| site_id | PS00028 |
| Number of Residues | 25 |
| Details | ZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. CqqpsCgggVfmaqhanrHycgrcH |
| Chain | Residue | Details |
| Af | CYS115-HIS139 |
| site_id | PS00049 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L14 Ribosomal protein L14 signature. GVVIrqrkqfrrk.DGtfiyFedNagVI |
| Chain | Residue | Details |
| CV | GLY79-ILE105 |
| site_id | PS00050 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVRLAsdydaldV |
| Chain | Residue | Details |
| CX | LYS124-VAL139 |
| site_id | PS00051 |
| Number of Residues | 17 |
| Details | RIBOSOMAL_L39E Ribosomal protein L39e signature. KTgntMkyNakrRHWRR |
| Chain | Residue | Details |
| Cl | LYS30-ARG46 |
| site_id | PS00052 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_S7 Ribosomal protein S7 signature. ErLansLMmhgrnnGKKlmtvrIVkhA |
| Chain | Residue | Details |
| AF | GLU76-ALA102 |
| site_id | PS00053 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_S8 Ribosomal protein S8 signature. GylILTTSaGIMdheeAR |
| Chain | Residue | Details |
| AW | GLY100-ARG117 |
| site_id | PS00054 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarA.GMkIgrieDvTPiPSD |
| Chain | Residue | Details |
| AO | LEU117-ASP139 |
| site_id | PS00055 |
| Number of Residues | 8 |
| Details | RIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR |
| Chain | Residue | Details |
| AX | LYS60-ARG67 |
| site_id | PS00056 |
| Number of Residues | 13 |
| Details | RIBOSOMAL_S17 Ribosomal protein S17 signature. GDlVtIgEcRPLS |
| Chain | Residue | Details |
| AL | GLY120-SER132 |
| site_id | PS00216 |
| Number of Residues | 18 |
| Details | SUGAR_TRANSPORT_1 Sugar transport proteins signature 1. LVYPAEVVGRRirvkldG |
| Chain | Residue | Details |
| AH | LEU133-GLY150 |
| site_id | PS00299 |
| Number of Residues | 26 |
| Details | UBIQUITIN_1 Ubiquitin domain signature. KqkIeAaegIPaeeQrLCYaGrqleD |
| Chain | Residue | Details |
| Af | LYS25-ASP50 | |
| Cm | LYS27-ASP52 |
| site_id | PS00323 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKvfnqteIkpemIGfyLGEFaiS |
| Chain | Residue | Details |
| AP | ASN104-SER128 |
| site_id | PS00358 |
| Number of Residues | 17 |
| Details | RIBOSOMAL_L5 Ribosomal protein L5 signature. LeqLTGQtpVfSkARyT |
| Chain | Residue | Details |
| CJ | LEU47-THR63 |
| site_id | PS00360 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGhvAQiyAvrqAlAKAL |
| Chain | Residue | Details |
| AQ | GLY72-LEU90 |
| site_id | PS00362 |
| Number of Residues | 31 |
| Details | RIBOSOMAL_S15 Ribosomal protein S15 signature. IrkHLersRkDidSkyrLilVesrihrLarY |
| Chain | Residue | Details |
| AN | ILE98-TYR128 |
| site_id | PS00464 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinpymsspCHIEViL |
| Chain | Residue | Details |
| CP | ARG128-LEU152 |
| site_id | PS00467 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L2 Ribosomal protein L2 signature. PrvRGVAmNPvE |
| Chain | Residue | Details |
| CA | PRO197-GLU208 |
| site_id | PS00474 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L3 Ribosomal protein L3 signature. FaqdemiDtiGvTrGHGfkGvtsR |
| Chain | Residue | Details |
| CB | PHE211-ARG234 |
| site_id | PS00475 |
| Number of Residues | 32 |
| Details | RIBOSOMAL_L15 Ribosomal protein L15 signature. KVLGkGlLpetp.LiVkarfFSheAeqkIkkaG |
| Chain | Residue | Details |
| Ca | LYS107-GLY138 |
| site_id | PS00526 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_L19E Ribosomal protein L19e signature. QKRLaSavlkCGkhrVWLDP |
| Chain | Residue | Details |
| CR | GLN7-PRO26 |
| site_id | PS00527 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_S14 Ribosomal protein S14 signature. RvCaghhglirkyg.LDLCRrCFR |
| Chain | Residue | Details |
| Ad | ARG22-ARG44 |
| site_id | PS00528 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLAaPshWmLdK |
| Chain | Residue | Details |
| AE | HIS7-LYS21 |
| site_id | PS00548 |
| Number of Residues | 37 |
| Details | RIBOSOMAL_S3 Ribosomal protein S3 signature. AKamkfvdGlMihSghpVndyIQqavrhvqLrqGviG |
| Chain | Residue | Details |
| AD | ALA149-GLY185 |
| site_id | PS00579 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L29 Ribosomal protein L29 signature. KLSKIRvVRKNIARL |
| Chain | Residue | Details |
| Ch | LYS43-LEU57 |
| site_id | PS00580 |
| Number of Residues | 21 |
| Details | RIBOSOMAL_L32E Ribosomal protein L32e signature. FkRhesdRyrRVaps..WRKpkG |
| Chain | Residue | Details |
| Ce | PHE19-GLY39 |
| site_id | PS00585 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_S5 Ribosomal protein S5 signature. GQrtrFkAfvAIGDha.GhVGlGvkcsk.EVat.AI |
| Chain | Residue | Details |
| AC | GLY115-ILE147 |
| site_id | PS00628 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_S19E Ribosomal protein S19e signature. PnhfqtsAgnClRkAVQqLE |
| Chain | Residue | Details |
| AT | PRO89-GLU108 |
| site_id | PS00632 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtqVFKlglAkSihhARiLI |
| Chain | Residue | Details |
| AJ | LEU105-ILE129 |
| site_id | PS00634 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_L30 Ribosomal protein L30 signature. ALqiLrLrQinNgVfvklnkatlpLLriIepYV |
| Chain | Residue | Details |
| CF | ALA104-VAL136 |
| site_id | PS00639 |
| Number of Residues | 11 |
| Details | THIOL_PROTEASE_HIS Eukaryotic thiol (cysteine) proteases histidine active site. LAHEIATVGPH |
| Chain | Residue | Details |
| CF | LEU186-HIS196 |
| site_id | PS00646 |
| Number of Residues | 14 |
| Details | RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHywGlrVRGQ |
| Chain | Residue | Details |
| AS | ARG121-GLN134 |
| site_id | PS00700 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QstaVkeKdiRkFlDGIYVseK |
| Chain | Residue | Details |
| CH | GLN161-LYS182 |
| site_id | PS00712 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_S17E Ribosomal protein S17e signature. IgSKpLRNkIAGYiTH |
| Chain | Residue | Details |
| AR | ILE41-HIS56 |
| site_id | PS00733 |
| Number of Residues | 8 |
| Details | RIBOSOMAL_S26E Ribosomal protein S26e signature. YCIACAIH |
| Chain | Residue | Details |
| Aa | TYR73-HIS80 |
| site_id | PS00783 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L13 Ribosomal protein L13 signature. VRGMLPhktnrGNealknLrAYeG |
| Chain | Residue | Details |
| CO | VAL85-GLY108 |
| site_id | PS00939 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L1E Ribosomal protein L1e signature. NiaqKryAVsSAIaASGipallqaRGH |
| Chain | Residue | Details |
| CC | ASN115-HIS141 |
| site_id | PS00948 |
| Number of Residues | 14 |
| Details | RIBOSOMAL_S7E Ribosomal protein S7e signature. ALvRELEKKFGgRD |
| Chain | Residue | Details |
| AH | ALA77-ASP90 |
| site_id | PS00961 |
| Number of Residues | 9 |
| Details | RIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL |
| Chain | Residue | Details |
| Ac | GLU56-LEU64 |
| site_id | PS00962 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VmKLLATQAHLG |
| Chain | Residue | Details |
| AA | VAL15-GLY26 |
| site_id | PS00963 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PrlLVIsDpriDhqaVtEasyvGVP |
| Chain | Residue | Details |
| AA | PRO119-PRO143 |
| site_id | PS00993 |
| Number of Residues | 21 |
| Details | RIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. ELGTacGRlfrvctLaVtDaG |
| Chain | Residue | Details |
| Cc | GLU82-GLY102 |
| site_id | PS00996 |
| Number of Residues | 9 |
| Details | RIBOSOMAL_S21E Ribosomal protein S21e signature. LYVPRKCSS |
| Chain | Residue | Details |
| AV | LEU11-SER19 |
| site_id | PS01077 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_L37E Ribosomal protein L37e signature. GTqAfGkKhvks.HtlCkRCG |
| Chain | Residue | Details |
| Cj | GLY4-GLY23 |
| site_id | PS01082 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CrkynVPYaiIkGKasLG |
| Chain | Residue | Details |
| CG | CYS175-GLY192 |
| site_id | PS01104 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L13E Ribosomal protein L13e signature. RlGRGFSLqELkaaG |
| Chain | Residue | Details |
| CL | ARG71-GLY85 |
| site_id | PS01105 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKItRpHGnaGaVrAkFhhnIP |
| Chain | Residue | Details |
| Cf | GLY86-PRO107 |
| site_id | PS01107 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L27E Ribosomal protein L27e signature. GKNkWFFtkLRF |
| Chain | Residue | Details |
| CZ | GLY125-PHE136 |
| site_id | PS01108 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeVvVMrGrhKGnt.GrV |
| Chain | Residue | Details |
| CY | ASP52-VAL69 |
| site_id | PS01144 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L31E Ribosomal protein L31e signature. VRVDtkLNkFiWsKG |
| Chain | Residue | Details |
| Cd | VAL58-GLY72 |
| site_id | PS01145 |
| Number of Residues | 14 |
| Details | RIBOSOMAL_L34E Ribosomal protein L34e signature. TtSnKkrlvKTPGG |
| Chain | Residue | Details |
| Cg | THR15-GLY28 |
| site_id | PS01170 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_L6E Ribosomal protein L6e signature. NgfPLRRigqaFVIATSl.K |
| Chain | Residue | Details |
| CE | ASN110-LYS128 |
| site_id | PS01171 |
| Number of Residues | 26 |
| Details | RIBOSOMAL_L21E Ribosomal protein L21e signature. GDlVdiktngafqk.GmpFkaYhGrTG |
| Chain | Residue | Details |
| CT | GLY37-GLY62 |
| site_id | PS01172 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L44E Ribosomal protein L44e signature. KtTKKivLRmeC |
| Chain | Residue | Details |
| Co | LYS62-CYS73 |
| site_id | PS01189 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_S12E Ribosomal protein S12e signature. ALRavLraAhhaDGLakGL |
| Chain | Residue | Details |
| AM | ALA25-LEU43 |
| site_id | PS01190 |
| Number of Residues | 11 |
| Details | RIBOSOMAL_L36E Ribosomal protein L36e signature. PYERRvLEMLR |
| Chain | Residue | Details |
| Ci | PRO54-ARG64 |
| site_id | PS01191 |
| Number of Residues | 13 |
| Details | RIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LkGRVfEvSLgDL |
| Chain | Residue | Details |
| AB | LEU60-LEU72 |
| site_id | PS01193 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_S8E Ribosomal protein S8e signature. RykTGAtqpvp.HkKrKfELG |
| Chain | Residue | Details |
| AI | ARG11-GLY30 |
| site_id | PS01194 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L15E Ribosomal protein L15e signature. EKARrLGYrAkqGFVVYRvRVrRG |
| Chain | Residue | Details |
| CN | GLU46-GLY69 |
| site_id | PS01257 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqtGMRgAYGKPqGlvARV |
| Chain | Residue | Details |
| CI | ALA108-VAL129 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250 |
| Chain | Residue | Details |
| Cm | LYS48 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) => ECO:0000255|PROSITE-ProRule:PRU00214 |
| Chain | Residue | Details |
| Af | GLY70 | |
| Cm | GLY76 |
