8WV1
Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, FA (A, a) | 23S rRNA | polymer | 2915 | 948021.6 | 2 | Thermus thermophilus HB8 | ||
| 2 | B, GA (B, b) | 5S rRNA | polymer | 122 | 39494.5 | 2 | Thermus thermophilus HB8 | ||
| 3 | C, HA (C, c) | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 2 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus HB8 | |
| 4 | D, IA (D, d) | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 2 | UniProt (Q5SHN8) Pfam (PF00297) | Thermus thermophilus HB8 | |
| 5 | E, JA (E, e) | 50S ribosomal protein L4 | polymer | 210 | 23271.9 | 2 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus HB8 | L1e |
| 6 | F, KA (F, f) | 50S ribosomal protein L5 | polymer | 182 | 21061.6 | 2 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus HB8 | |
| 7 | G, LA (G, g) | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 2 | UniProt (P0DOY8) Pfam (PF00347) | Thermus thermophilus HB8 | |
| 8 | H, MA (H, h) | Large ribosomal subunit protein bL9 | polymer | 148 | 16422.2 | 2 | UniProt (P27151) Pfam (PF01281) Pfam (PF03948) UniProt (by SIFTS) (Q5SLQ1) | Thermus thermophilus HB8 | 50S ribosomal protein L9 |
| 9 | I, NA (I, i) | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 2 | UniProt (P60488) Pfam (PF00572) | Thermus thermophilus HB8 | |
| 10 | J, OA (J, j) | Large ribosomal subunit protein uL14 | polymer | 122 | 13323.6 | 2 | UniProt (Q5SHP8) Pfam (PF00238) | Thermus thermophilus HB8 | 50S ribosomal protein L14 |
| 11 | K, PA (K, k) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q5SHQ7) Pfam (PF00828) | Thermus thermophilus HB8 | |
| 12 | L, QA (L, l) | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 2 | UniProt (P60489) Pfam (PF00252) | Thermus thermophilus HB8 | |
| 13 | M, RA (M, m) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q9Z9H5) Pfam (PF01196) | Thermus thermophilus HB8 | |
| 14 | N, SA (N, n) | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 2 | UniProt (Q5SHQ4) Pfam (PF00861) | Thermus thermophilus HB8 | TL24 |
| 15 | O, TA (O, o) | 50S ribosomal protein L19 | polymer | 146 | 17188.8 | 2 | UniProt (P60490) Pfam (PF01245) | Thermus thermophilus HB8 | |
| 16 | P, UA (P, p) | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 2 | UniProt (P60491) Pfam (PF00453) | Thermus thermophilus HB8 | |
| 17 | Q, VA (Q, q) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (P60492) Pfam (PF00829) | Thermus thermophilus HB8 | |
| 18 | R, WA (R, r) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q5SHP3) Pfam (PF00237) | Thermus thermophilus HB8 | |
| 19 | S, XA (S, s) | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q5SHP0) Pfam (PF00276) | Thermus thermophilus HB8 | |
| 20 | T, YA (T, t) | Large ribosomal subunit protein uL24 | polymer | 107 | 11726.3 | 2 | UniProt (Q56435) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q5SHP9) | Thermus thermophilus HB8 | 50S ribosomal protein L24 |
| 21 | U, ZA (U, u) | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus HB8 | TL5 |
| 22 | AB, V (V, v) | Large ribosomal subunit protein bL27 | polymer | 78 | 8760.1 | 2 | UniProt (A0A1J1EPZ8) Pfam (PF01016) UniProt (by SIFTS) (P60493) | Thermus thermophilus HB8 | |
| 23 | BB, W (W, w) | Large ribosomal subunit protein bL28 | polymer | 98 | 11004.2 | 2 | UniProt (A0A510IGH7) Pfam (PF00830) UniProt (by SIFTS) (P60494) | Thermus thermophilus HB8 | |
| 24 | CB, X (X, x) | Large ribosomal subunit protein uL29 | polymer | 72 | 8670.3 | 2 | UniProt (A0A1J1EJJ8) Pfam (PF00831) UniProt (by SIFTS) (Q5SHP6) | Thermus thermophilus HB8 | |
| 25 | DB, Y (Y, y) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 2 | UniProt (Q5SHQ6) Pfam (PF00327) | Thermus thermophilus HB8 | |
| 26 | EB, Z (Z, z) | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q5SJE1) Pfam (PF01197) | Thermus thermophilus HB8 | |
| 27 | AA, FB (0, 5) | 50S ribosomal protein L32 | polymer | 60 | 6722.1 | 2 | UniProt (P80339) Pfam (PF01783) | Thermus thermophilus HB8 | |
| 28 | BA, GB (13, 6) | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 2 | UniProt (P35871) Pfam (PF00471) | Thermus thermophilus HB8 | |
| 29 | CA, HB (2, 7) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus HB8 | |
| 30 | DA, IB (3, 8) | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 2 | UniProt (Q5SKU1) Pfam (PF01632) | Thermus thermophilus HB8 | |
| 31 | EA, JB (4, 9) | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 2 | UniProt (Q5SHR2) Pfam (PF00444) | Thermus thermophilus HB8 | Ribosomal protein B |
| 32 | AAA, AAB, AAC, AAD, AAE... (A, a, b, c, d...) | MAGNESIUM ION | non-polymer | 24.3 | 3807 | Chemie (MG) PubChem (888) | |||
| 33 | BRE, BSE, LPB, MOB, OQE... (6, 9, 4, Z, z...) | ZINC ION | non-polymer | 65.4 | 10 | Chemie (ZN) | |||
| 34 | ATE, AUE, BTE, BUE, CTE... (X, u, Y, v, 0...) | water | water | 18.0 | 10253 | Chemie (HOH) |
Sequence modifications
H, h: 1 - 148 (UniProt: P27151)
V, v: 8 - 85 (UniProt: A0A1J1EPZ8)
| PDB | External Database | Details |
|---|---|---|
| Glu 70 | Lys 70 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 11 | Lys 11 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 62 |
| Total formula weight | 2768622.5 | |
| Non-Polymers* | Number of molecules | 3817 |
| Total formula weight | 93183.2 | |
| All* | Total formula weight | 2861805.7 |
