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8W6P

Crystal structure of dimeric murine SMPDL3A

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, BAcid sphingomyelinase-like phosphodiesterase 3apolymer41346664.62UniProt (P70158)
Pfam (PF00149)
Pfam (PF19272)
In PDB
Mus musculus (house mouse)ASM-like phosphodiesterase 3a
2C, E2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.42In PDB
GlyTouCan (G42666HT)
3Dalpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched367.31In PDB
GlyTouCan (G86851RC)
4Fbeta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched586.51In PDB
GlyTouCan (G15407YE)
5A[(2~{R},3~{S},4~{S})-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphinic acidnon-polymer230.21Chemie (YA4)
6A, B2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.26Chemie (NAG)
7A, BZINC IONnon-polymer65.44Chemie (ZN)
8Balpha-L-fucopyranosenon-polymer164.21Chemie (FUC)
9BPHOSPHATE IONnon-polymer95.01Chemie (PO4)
10waterwater18.0804Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight93329.2
BranchedNumber of molecules4
Total formula weight1802.7
Non-Polymers*Number of molecules13
Total formula weight2078.2
All*Total formula weight97210.1
*Water molecules are not included.

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PDB entries from 2024-07-24

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