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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8VSA

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1L0250S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
2L0350S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
3L0450S ribosomal protein L4polymer20122121.61UniProt (A1AGK6)
Pfam (PF00573)
In PDB		Escherichia coli
4L0550S ribosomal protein L5polymer17920333.61UniProt (A0A140N5A3)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli
5L0650S ribosomal protein L6polymer17718932.81UniProt (C3SR17)
Pfam (PF00347)
In PDB		Escherichia coli
6L09Large ribosomal subunit protein bL9polymer14915789.01UniProt (C3SFP2)
Pfam (PF03948)
Pfam (PF01281)
In PDB		Escherichia coli
7L150S ribosomal protein L1polymer23424765.71UniProt (B7MIX0)
Pfam (PF00687)
In PDB		Escherichia coli
8L1050S ribosomal protein L10polymer16517736.61UniProt (P0A7J3)
Pfam (PF00466)
In PDB		Escherichia coli50S ribosomal protein L8,Large ribosomal subunit protein uL10
9L1150S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coliLarge ribosomal subunit protein uL11
10L1350S ribosomal protein L13polymer14216050.61UniProt (S1EW51)
In PDB		Escherichia coli
11L1450S ribosomal protein L14polymer12313565.11UniProt (S1NW45)
Pfam (PF00238)
In PDB		Escherichia coli
12L1550S ribosomal protein L15polymer14415008.51UniProt (A0A037Y8L6)
Pfam (PF00828)
In PDB		Escherichia coli
13L1650S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
14L17Large ribosomal subunit protein bL17polymer12714393.71UniProt (C3SR72)
Pfam (PF01196)
In PDB		Escherichia coli
15L1850S ribosomal protein L18polymer11712794.71UniProt (S1E9N8)
In PDB		Escherichia coli
16L1950S ribosomal protein L19polymer11513159.31UniProt (V0AJX1)
In PDB		Escherichia coli
17L2050S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
In PDB		Escherichia coli
18L21Ribosomal protein L21polymer10311586.41UniProt (C3SSG2)
Pfam (PF00829)
In PDB		Escherichia coli
19L2250S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliLarge ribosomal subunit protein uL22
20L2350S ribosomal protein L23polymer10011222.21UniProt (U9Y6C4)
In PDB		Escherichia coli
21L2450S ribosomal protein L24polymer10411339.31UniProt (A0A1X3KWX7)
In PDB		Escherichia coli
22L2550S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
In PDB		Escherichia coli
23L2750S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
24L2850S ribosomal protein L28polymer789027.61UniProt (A0A1X3JA73)
Pfam (PF00830)
In PDB		Escherichia coli
25L2950S ribosomal protein L29polymer637286.51UniProt (D6IEL0)
In PDB		Escherichia coli
26L30Large ribosomal subunit protein uL30polymer596554.81UniProt (C3SR32)
Pfam (PF00327)
In PDB		Escherichia coli
27L31Large ribosomal subunit protein bL31polymer455093.91UniProt (C3SIV2)
Pfam (PF01197)
In PDB		Escherichia coli
28L3250S ribosomal protein L32polymer576463.41UniProt (D7XI28)
In PDB		Escherichia coli
29L33Large ribosomal subunit protein bL33polymer556388.61UniProt (C3SME7)
Pfam (PF00471)
In PDB		Escherichia coli
30L3450S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
In PDB		Escherichia coli
31L3550S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
32L3650S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
In PDB		Escherichia coli
3323S23S ribosomal RNApolymer2903941305.31GenBank (1036415628)Escherichia coli
345S5S ribosomal RNApolymer12038813.11GenBank (1370526515)Escherichia coli
35TMRNTMRNpolymer363117198.31GenBank (1741105611)Escherichia coli
3616S16S ribosomal RNApolymer1539498725.41GenBank (1338015391)Escherichia coli
37ATRNA-tRNApolymer7624476.51GenBank (1845258627)Escherichia coli
38S0230S ribosomal protein S2polymer24126781.71UniProt (C3TPN2)
Pfam (PF00318)
In PDB		Escherichia coli
39S0330S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli
40S0430S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli
41S0530S ribosomal protein S5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli
42S0630S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coliSmall ribosomal subunit protein bS6
43S0730S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coliSmall ribosomal subunit protein uS7
44S0830S ribosomal protein S8polymer13014146.61UniProt (D7XKZ3)
In PDB		Escherichia coli
45S09Small ribosomal subunit protein uS9polymer13014886.31UniProt (C3SRY2)
Pfam (PF00380)
In PDB		Escherichia coli
46S1030S ribosomal protein S10polymer10311755.61UniProt (V0ANK5)
In PDB		Escherichia coli
47S1130S ribosomal protein S11polymer12913871.01UniProt (B7MCR3)
Pfam (PF00411)
In PDB		Escherichia coli
48S1230S ribosomal protein S12polymer12413768.21UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli
49S1330S ribosomal protein S13polymer11813128.51UniProt (A0A7U9IV78)
Pfam (PF00416)
In PDB		Escherichia coli
50S14Small ribosomal subunit protein uS14polymer10111606.61UniProt (A0A2X1PQW4)
Pfam (PF00253)
In PDB		Escherichia coli
51S15Small ribosomal subunit protein uS15polymer8910290.81UniProt (C3SSQ7)
Pfam (PF00312)
In PDB		Escherichia coli
52S1630S ribosomal protein S16polymer829207.61UniProt (C3SYP2)
Pfam (PF00886)
In PDB		Escherichia coli
53S17Small ribosomal subunit protein uS17polymer849724.51UniProt (C3SQY7)
Pfam (PF00366)
In PDB		Escherichia coli
54S1830S ribosomal protein S18polymer759005.51UniProt (A0A0E2KXL3)
Pfam (PF01084)
In PDB		Escherichia coli
55S1930S ribosomal protein S19polymer9210455.41UniProt (S1EA57)
In PDB		Escherichia coli
56S2030S ribosomal protein S20polymer879708.51UniProt (C3TRH7)
Pfam (PF01649)
In PDB		Escherichia coli
57S2130S ribosomal protein S21polymer718524.01UniProt (A0A0E2L2J1)
Pfam (PF01165)
In PDB		Escherichia coli
58SMPBSsrA-binding proteinpolymer15017192.81UniProt (A0A2X1N680)
Pfam (PF01668)
In PDB		Escherichia coliSmall protein B
Sequence modifications
23S: 1 - 2903 (GenBank: 1036415628)
PDBExternal DatabaseDetails
C 747U 1155325variant
5S: 1 - 120 (GenBank: 1370526515)
PDBExternal DatabaseDetails
A 120U 2744652conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2352280.1
All*Total formula weight2352280.1
*Water molecules are not included.

221051

PDB entries from 2024-06-12

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