8VSA
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
This is a non-PDB format compatible entry.
Functional Information from PROSITE/UniProt
| site_id | PS00784 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpsvlkRnrsh.GFraR |
| Chain | Residue | Details |
| L34 | LYS2-ARG21 |
| site_id | PS01167 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_L17 Ribosomal protein L17 signature. IkTTlpKaKelrrvvEpLITlAK |
| Chain | Residue | Details |
| L17 | ILE34-LYS56 |
| site_id | PS00783 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_L13 Ribosomal protein L13 signature. VKGMLPkgpl.GRamfrkLkVYaG |
| Chain | Residue | Details |
| L13 | VAL105-GLY127 |
| site_id | PS00052 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_S7 Ribosomal protein S7 signature. SeLlakFVnilmvdGKKstaesIVysA |
| Chain | Residue | Details |
| S07 | SER19-ALA45 |
| site_id | PS00579 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L29 Ribosomal protein L29 signature. QSHLLKqVRRDVARV |
| Chain | Residue | Details |
| L29 | GLN39-VAL53 |
| site_id | PS00057 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.IatLknYITEs.GKIvpsRI |
| Chain | Residue | Details |
| S18 | ILE20-ILE43 |
| site_id | PS00054 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALnaA.GFrItnitDvTPiPHN |
| Chain | Residue | Details |
| S11 | ILE96-ASN118 |
| site_id | PS00632 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S4 Ribosomal protein S4 signature. LEgRLdnvVYRmgfGaTraeARqLV |
| Chain | Residue | Details |
| S04 | LEU93-VAL117 |
| site_id | PS00361 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_S10 Ribosomal protein S10 signature. AkrtGAqvrGPIpLPT |
| Chain | Residue | Details |
| S10 | ALA29-THR44 |
| site_id | PS01199 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_L1 Ribosomal protein L1 signature. MrvVgq.LGqvLGPRGlMPN |
| Chain | Residue | Details |
| L1 | MET121-ASN139 |
| site_id | PS01181 |
| Number of Residues | 13 |
| Details | RIBOSOMAL_S21 Ribosomal protein S21 signature. DvALRRFKRsceK |
| Chain | Residue | Details |
| S21 | ASP12-LYS24 |
| site_id | PS00061 |
| Number of Residues | 29 |
| Details | ADH_SHORT Short-chain dehydrogenases/reductases family signature. PdhkhavialTsiYGVGKTRSkAILaAAG |
| Chain | Residue | Details |
| S13 | PRO9-GLY37 |
| site_id | PS00646 |
| Number of Residues | 14 |
| Details | RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ |
| Chain | Residue | Details |
| S13 | ARG86-GLN99 |
| site_id | PS00467 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGTAmNPvD |
| Chain | Residue | Details |
| L02 | PRO217-ASP228 |
| site_id | PS00582 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_L33 Ribosomal protein L33 signature. YtTtKNkrtkPekLElkKFD |
| Chain | Residue | Details |
| L33 | TYR20-ASP39 |
| site_id | PS00056 |
| Number of Residues | 13 |
| Details | RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIrEcRPLS |
| Chain | Residue | Details |
| S17 | GLY55-SER67 |
| site_id | PS01015 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_L19 Ribosomal protein L19 signature. VkRrGAVR.KAKLYYLR |
| Chain | Residue | Details |
| L19 | VAL85-ARG100 |
| site_id | PS01048 |
| Number of Residues | 10 |
| Details | RIBOSOMAL_S6 Ribosomal protein S6 signature. GrRQLAYpIN |
| Chain | Residue | Details |
| S06 | GLY43-ASN52 |
| site_id | PS00651 |
| Number of Residues | 28 |
| Details | RIBOSOMAL_L9 Ribosomal protein L9 signature. GslGdqvnVkaGYarNFLvpqgkAvpaT |
| Chain | Residue | Details |
| L09 | GLY13-THR40 |
| site_id | PS00937 |
| Number of Residues | 17 |
| Details | RIBOSOMAL_L20 Ribosomal protein L20 signature. KrqfRqLWIARINaaaR |
| Chain | Residue | Details |
| L20 | LYS53-ARG69 |
| site_id | PS00360 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGisGQagAirhGiTRAL |
| Chain | Residue | Details |
| S09 | GLY68-LEU86 |
| site_id | PS00475 |
| Number of Residues | 31 |
| Details | RIBOSOMAL_L15 Ribosomal protein L15 signature. KVILaGeVttp..VtVrglrVTkgAraaIeaaG |
| Chain | Residue | Details |
| L15 | LYS109-GLY139 |
| site_id | PS00323 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S19 Ribosomal protein S19 signature. NGRqhvpvfVtdemVGhkLGEFapT |
| Chain | Residue | Details |
| S19 | ASN52-THR76 |
| site_id | PS00548 |
| Number of Residues | 35 |
| Details | RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewyreGrVplHt..LradIDyntseahTtyGviG |
| Chain | Residue | Details |
| S03 | ALA162-GLY196 |
| site_id | PS00634 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_L30 Ribosomal protein L30 signature. TLlgLgLrRigHtVeredtpairgMInaVsfMV |
| Chain | Residue | Details |
| L30 | THR22-VAL54 |
| site_id | PS00050 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVTLKegqnldfV |
| Chain | Residue | Details |
| L23 | LYS81-VAL96 |
| site_id | PS00430 |
| Number of Residues | 66 |
| Details | TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevv.........................................................NTLVVKGK |
| Chain | Residue | Details |
| L23 | MET1-LYS66 |
| site_id | PS00585 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_S5 Ribosomal protein S5 signature. GRifsFtAltVVGDgn.GrVGfGygkar.EVpa.AI |
| Chain | Residue | Details |
| S05 | GLY27-ILE59 |
| site_id | PS00732 |
| Number of Residues | 10 |
| Details | RIBOSOMAL_S16 Ribosomal protein S16 signature. VtIRLARHGA |
| Chain | Residue | Details |
| S16 | VAL2-ALA11 |
| site_id | PS00049 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtkkgvrrp.DGsvirFdgNacVL |
| Chain | Residue | Details |
| L14 | ALA60-LEU86 |
| site_id | PS00359 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_L11 Ribosomal protein L11 signature. RsIeGTarSMGlVVeD |
| Chain | Residue | Details |
| L11 | ARG126-ASP141 |
| site_id | PS00828 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L36 Ribosomal protein L36 signature. CrnCkiVkRdgvIrViCsaepKHkQrQ |
| Chain | Residue | Details |
| L36 | CYS11-GLN37 |
| site_id | PS00527 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CrqtgrphgflrkFGLSRiKVR |
| Chain | Residue | Details |
| S14 | ARG62-ARG84 |
| site_id | PS00464 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_L22 Ribosomal protein L22 signature. KriMpRAkGRadrilkrtSHITVvV |
| Chain | Residue | Details |
| L22 | LYS83-VAL107 |
| site_id | PS00055 |
| Number of Residues | 8 |
| Details | RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR |
| Chain | Residue | Details |
| S12 | LYS42-ARG49 |
| site_id | PS00586 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. KRqGKIWIRVFP |
| Chain | Residue | Details |
| L16 | LYS58-PRO69 |
| site_id | PS00701 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGkGKGnveyW |
| Chain | Residue | Details |
| L16 | ARG81-TRP92 |
| site_id | PS01109 |
| Number of Residues | 35 |
| Details | RIBOSOMAL_L10 Ribosomal protein L10 signature. KqaIvaeVSevakgalsaVvaDsrGVTVdKMteLR |
| Chain | Residue | Details |
| L10 | LYS8-ARG42 |
| site_id | PS00936 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L35 Ribosomal protein L35 signature. KTVrGAaKRFkktgkggfkhkhanl.RH |
| Chain | Residue | Details |
| L35 | LYS4-HIS30 |
| site_id | PS00831 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L27 Ribosomal protein L27 signature. GsIIvRQRGtkfhaG |
| Chain | Residue | Details |
| L27 | GLY30-GLY44 |
| site_id | PS00362 |
| Number of Residues | 31 |
| Details | RIBOSOMAL_S15 Ribosomal protein S15 signature. LqgHFaehKkDhhSrrgLlrMvsqrrkLldY |
| Chain | Residue | Details |
| S15 | LEU38-TYR68 |
| site_id | PS01169 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_L21 Ribosomal protein L21 signature. VkivKfrrRKhyrkqqGHRQwfT |
| Chain | Residue | Details |
| L21 | VAL72-THR94 |
| site_id | PS00358 |
| Number of Residues | 17 |
| Details | RIBOSOMAL_L5 Ribosomal protein L5 signature. LaaISGQkpLiTkARkS |
| Chain | Residue | Details |
| L05 | LEU56-SER72 |
| site_id | PS00525 |
| Number of Residues | 9 |
| Details | RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGV |
| Chain | Residue | Details |
| L06 | PRO153-VAL161 |
| site_id | PS01108 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeViVLtGkdKGkr.GkV |
| Chain | Residue | Details |
| L24 | ASP7-VAL24 |
| site_id | PS01317 |
| Number of Residues | 13 |
| Details | SSRP SsrA-binding protein. AGLaLqGwEVKSL |
| Chain | Residue | Details |
| SMPB | ALA32-LEU44 |
| site_id | PS00053 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaVVSTSkGVMtdraAR |
| Chain | Residue | Details |
| S08 | GLY99-ARG116 |
| site_id | PS00474 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L3 Ribosomal protein L3 signature. FadvkkvDvtGtSkGKGfaGtvkR |
| Chain | Residue | Details |
| L03 | PHE101-ARG124 |
| site_id | PS00962 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. MrDMLKAGVHFG |
| Chain | Residue | Details |
| S02 | MET5-GLY16 |
| site_id | PS00963 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdaLFViDadhEhiaIkEannlGIP |
| Chain | Residue | Details |
| S02 | PRO157-PRO181 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | MOD_RES: 3-methylthioaspartic acid => ECO:0000269|PubMed:8844851 |
| Chain | Residue | Details |
| L10 | LYS105 | |
| S12 | ASP88 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:18723842 |
| Chain | Residue | Details |
| S12 | LYS107 | |
| L11 | LYS39 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-succinyllysine => ECO:0000269|PubMed:21151122 |
| Chain | Residue | Details |
| L11 | LYS71 | |
| L11 | LYS80 |
