8VK9
Structure of UbV.d2.3 in complex with Ube2d2-S22R
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G (A, C, E, G) | Ubiquitin-conjugating enzyme E2 D2 | polymer | 152 | 17188.6 | 4 | UniProt (P62837) Pfam (PF00179) | Homo sapiens (human) | (E3-independent) E2 ubiquitin-conjugating enzyme D2,E2 ubiquitin-conjugating enzyme D2,Ubiquitin carrier protein D2,Ubiquitin-conjugating enzyme E2(17)KB 2,Ubiquitin-conjugating enzyme E2-17 kDa 2,Ubiquitin-protein ligase D2,p53-regulated ubiquitin-conjugating enzyme 1 |
| 2 | B, D, F, H (B, D, F, H) | Ubiquitin variant D2.3 | polymer | 94 | 10422.9 | 4 | synthetic construct | ||
| 3 | I, J, K, L, M (A, C, E, G) | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) PubChem (753) | |||
| 4 | N, O, P, Q, R... (A, B, C, D, E...) | water | water | 18.0 | 362 | Chemie (HOH) |
Sequence modifications
A, C, E, G: 1 - 147 (UniProt: P62837)
| PDB | External Database | Details |
|---|---|---|
| Gly -4 | - | expression tag |
| Pro -3 | - | expression tag |
| Leu -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Ser 0 | - | expression tag |
| Ser 21 | Cys 21 | engineered mutation |
| Arg 22 | Ser 22 | engineered mutation |
| Ser 107 | Cys 107 | engineered mutation |
| Ser 111 | Cys 111 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 110445.9 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 460.5 | |
| All* | Total formula weight | 110906.3 |
